miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 6264 0.66 0.944536
Target:  5'- aCUCGGCGCCaccucucUUCGcGCUCUAGa- -3'
miRNA:   3'- -GAGCCGCGGguuu---GAGC-CGAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 16517 0.7 0.80643
Target:  5'- -gCGGCGCUC-GGCUCGGCUggAGCGc -3'
miRNA:   3'- gaGCCGCGGGuUUGAGCCGAggUUGU- -5'
13987 5' -56.7 NC_003521.1 + 17372 0.69 0.839432
Target:  5'- -gCGGCgGCCCAGACUCGagagggaccGCUCCc--- -3'
miRNA:   3'- gaGCCG-CGGGUUUGAGC---------CGAGGuugu -5'
13987 5' -56.7 NC_003521.1 + 28838 0.68 0.883522
Target:  5'- -gCGGCGCCUGGACgaCGaGCUgCGGCGg -3'
miRNA:   3'- gaGCCGCGGGUUUGa-GC-CGAgGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 29710 0.72 0.684517
Target:  5'- cCUCGGCGCCUggcugcuGAGcCUCGGCg-CGACGg -3'
miRNA:   3'- -GAGCCGCGGG-------UUU-GAGCCGagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 36677 0.68 0.869611
Target:  5'- uCUCGGCcgaGCUgAGGC-CgGGCUCCGGCGc -3'
miRNA:   3'- -GAGCCG---CGGgUUUGaG-CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 39046 0.67 0.925463
Target:  5'- -gUGGCGCCgAGGCgaaCGGCucguaguuuUCCAGCu -3'
miRNA:   3'- gaGCCGCGGgUUUGa--GCCG---------AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 39642 0.69 0.839432
Target:  5'- uCUCGuuGCGCCCAcuugcgcauGGCUCGGCUggugguguuagCCAugAa -3'
miRNA:   3'- -GAGC--CGCGGGU---------UUGAGCCGA-----------GGUugU- -5'
13987 5' -56.7 NC_003521.1 + 39705 0.73 0.63612
Target:  5'- -aUGGUGCCCAuGGCUUGGUauUCCAGCu -3'
miRNA:   3'- gaGCCGCGGGU-UUGAGCCG--AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 39834 0.74 0.58666
Target:  5'- -aUGGCGCCU--GCUUGGCcUCCGGCGu -3'
miRNA:   3'- gaGCCGCGGGuuUGAGCCG-AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 40499 0.67 0.902813
Target:  5'- -aCGGCGCCgCAGcgcauCUCGaacucCUCCAGCAg -3'
miRNA:   3'- gaGCCGCGG-GUUu----GAGCc----GAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 40785 0.68 0.8549
Target:  5'- gCUCGGCGaCuCCGGACUccCGGCgcggUCAGCu -3'
miRNA:   3'- -GAGCCGC-G-GGUUUGA--GCCGa---GGUUGu -5'
13987 5' -56.7 NC_003521.1 + 43481 0.67 0.925463
Target:  5'- -gCGGCGgCCGuGCUggccgCGGCggCCAACAu -3'
miRNA:   3'- gaGCCGCgGGUuUGA-----GCCGa-GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 43860 0.71 0.752646
Target:  5'- --aGGCGCCCcGGC-CGGCUCCcgGGCc -3'
miRNA:   3'- gagCCGCGGGuUUGaGCCGAGG--UUGu -5'
13987 5' -56.7 NC_003521.1 + 45890 0.66 0.948749
Target:  5'- -cCGGCGUCCaAGACgacgCGaGCaCCAGCAu -3'
miRNA:   3'- gaGCCGCGGG-UUUGa---GC-CGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 47631 0.67 0.914583
Target:  5'- --aGGCgGCCguGACggCGGCUCUGGCGg -3'
miRNA:   3'- gagCCG-CGGguUUGa-GCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 50088 0.7 0.760986
Target:  5'- uUCGGCGUCCAgaggguuGACUUcgGGgUCCGGCGu -3'
miRNA:   3'- gAGCCGCGGGU-------UUGAG--CCgAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 53455 0.67 0.914583
Target:  5'- gCUCGGCGgCCAGGg-CGucCUCCAGCGa -3'
miRNA:   3'- -GAGCCGCgGGUUUgaGCc-GAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 61587 0.67 0.908809
Target:  5'- uUCaGGCGCCagaAGGCccgCGGCgggaCCAACAa -3'
miRNA:   3'- gAG-CCGCGGg--UUUGa--GCCGa---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 62112 0.69 0.83143
Target:  5'- uUCGGCGCCCGcGCggGGaaCCAAUg -3'
miRNA:   3'- gAGCCGCGGGUuUGagCCgaGGUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.