miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 240061 0.74 0.58666
Target:  5'- -aUGGCGCCU--GCUUGGCcUCCGGCGu -3'
miRNA:   3'- gaGCCGCGGGuuUGAGCCG-AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 239932 0.73 0.63612
Target:  5'- -aUGGUGCCCAuGGCUUGGUauUCCAGCu -3'
miRNA:   3'- gaGCCGCGGGU-UUGAGCCG--AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 239869 0.69 0.839432
Target:  5'- uCUCGuuGCGCCCAcuugcgcauGGCUCGGCUggugguguuagCCAugAa -3'
miRNA:   3'- -GAGC--CGCGGGU---------UUGAGCCGA-----------GGUugU- -5'
13987 5' -56.7 NC_003521.1 + 239274 0.67 0.925463
Target:  5'- -gUGGCGCCgAGGCgaaCGGCucguaguuuUCCAGCu -3'
miRNA:   3'- gaGCCGCGGgUUUGa--GCCG---------AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 236591 0.67 0.908809
Target:  5'- -aCGGCaGCCagc-CUCggGGCUCCGACAc -3'
miRNA:   3'- gaGCCG-CGGguuuGAG--CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 236550 0.66 0.948749
Target:  5'- uUCGGCGUCgCucg-UCGGCUCCGcCGu -3'
miRNA:   3'- gAGCCGCGG-GuuugAGCCGAGGUuGU- -5'
13987 5' -56.7 NC_003521.1 + 234580 0.68 0.883522
Target:  5'- uCUCGGCGUCCGcgggAGCgcCGGuCUCCAu-- -3'
miRNA:   3'- -GAGCCGCGGGU----UUGa-GCC-GAGGUugu -5'
13987 5' -56.7 NC_003521.1 + 234072 0.66 0.944536
Target:  5'- -aUGGaCGCCCuggGACUCGGCgagcgCUGGCu -3'
miRNA:   3'- gaGCC-GCGGGu--UUGAGCCGa----GGUUGu -5'
13987 5' -56.7 NC_003521.1 + 233999 0.77 0.403542
Target:  5'- cCUCGGCGCCCuccuggucuggaUCGGCUCCGGu- -3'
miRNA:   3'- -GAGCCGCGGGuuug--------AGCCGAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 233410 0.7 0.761907
Target:  5'- uCUCGGCuccugGCCCcgg--UGGCUCCGACGg -3'
miRNA:   3'- -GAGCCG-----CGGGuuugaGCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 227610 0.66 0.935446
Target:  5'- uUgGGCGCCgG---UCGGCccUCCAACAc -3'
miRNA:   3'- gAgCCGCGGgUuugAGCCG--AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 225591 0.73 0.616296
Target:  5'- gCUCGGCGgCCucgcGCUCGGCcgCCuGCAg -3'
miRNA:   3'- -GAGCCGCgGGuu--UGAGCCGa-GGuUGU- -5'
13987 5' -56.7 NC_003521.1 + 224746 0.66 0.940102
Target:  5'- --aGGCGgCCAGcGCgucggGGCUCCGGCAg -3'
miRNA:   3'- gagCCGCgGGUU-UGag---CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 224550 0.66 0.944536
Target:  5'- -cCGGCGCCCAGca--GGaaCCAGCGg -3'
miRNA:   3'- gaGCCGCGGGUUugagCCgaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 223587 0.67 0.902813
Target:  5'- -aCGGCGCgCCuccacCUCGGcCUCCGAg- -3'
miRNA:   3'- gaGCCGCG-GGuuu--GAGCC-GAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 223389 0.66 0.930567
Target:  5'- -gCGGCGCCCcGACgcgggccgugUGGCgccCCGGCGc -3'
miRNA:   3'- gaGCCGCGGGuUUGa---------GCCGa--GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 220184 0.73 0.63612
Target:  5'- --aGGCGCCCAccAGCgcgCGGCUCUccgAGCAc -3'
miRNA:   3'- gagCCGCGGGU--UUGa--GCCGAGG---UUGU- -5'
13987 5' -56.7 NC_003521.1 + 209001 0.69 0.814921
Target:  5'- uUCGGCGCCCGGGCcgagaCGGCgCUcaAACGc -3'
miRNA:   3'- gAGCCGCGGGUUUGa----GCCGaGG--UUGU- -5'
13987 5' -56.7 NC_003521.1 + 207954 0.66 0.944536
Target:  5'- -gCGGCGCgggcgCCAAACcgaUCGGcCUCCAGa- -3'
miRNA:   3'- gaGCCGCG-----GGUUUG---AGCC-GAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 207345 0.7 0.771061
Target:  5'- -gUGGCGCCCGAGauCUgGGuCUCCAGuCAg -3'
miRNA:   3'- gaGCCGCGGGUUU--GAgCC-GAGGUU-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.