Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13987 | 5' | -56.7 | NC_003521.1 | + | 82849 | 0.7 | 0.803853 |
Target: 5'- --aGGUGCCCAAGCcuguuguugcggguUCGGCUCUcggaaGACGg -3' miRNA: 3'- gagCCGCGGGUUUG--------------AGCCGAGG-----UUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 220184 | 0.73 | 0.63612 |
Target: 5'- --aGGCGCCCAccAGCgcgCGGCUCUccgAGCAc -3' miRNA: 3'- gagCCGCGGGU--UUGa--GCCGAGG---UUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 239932 | 0.73 | 0.63612 |
Target: 5'- -aUGGUGCCCAuGGCUUGGUauUCCAGCu -3' miRNA: 3'- gaGCCGCGGGU-UUGAGCCG--AGGUUGu -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 116742 | 0.72 | 0.69528 |
Target: 5'- gUCGGCGCCCuucAAACacgUGGCUUguGCAg -3' miRNA: 3'- gAGCCGCGGG---UUUGa--GCCGAGguUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 149044 | 0.71 | 0.724298 |
Target: 5'- uCUCGaggccGUGCCCGcGCUgGGCUUCGACGc -3' miRNA: 3'- -GAGC-----CGCGGGUuUGAgCCGAGGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 43860 | 0.71 | 0.752646 |
Target: 5'- --aGGCGCCCcGGC-CGGCUCCcgGGCc -3' miRNA: 3'- gagCCGCGGGuUUGaGCCGAGG--UUGu -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 50088 | 0.7 | 0.760986 |
Target: 5'- uUCGGCGUCCAgaggguuGACUUcgGGgUCCGGCGu -3' miRNA: 3'- gAGCCGCGGGU-------UUGAG--CCgAGGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 233410 | 0.7 | 0.761907 |
Target: 5'- uCUCGGCuccugGCCCcgg--UGGCUCCGACGg -3' miRNA: 3'- -GAGCCG-----CGGGuuugaGCCGAGGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 191019 | 0.7 | 0.78901 |
Target: 5'- -aCGGCGCCCAGccAUUCGGgCggCAGCGu -3' miRNA: 3'- gaGCCGCGGGUU--UGAGCC-GagGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 179250 | 0.73 | 0.616296 |
Target: 5'- -cUGGCGCCUGAACUCGcCggCCAGCAg -3' miRNA: 3'- gaGCCGCGGGUUUGAGCcGa-GGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 225591 | 0.73 | 0.616296 |
Target: 5'- gCUCGGCGgCCucgcGCUCGGCcgCCuGCAg -3' miRNA: 3'- -GAGCCGCgGGuu--UGAGCCGa-GGuUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 71046 | 0.73 | 0.616296 |
Target: 5'- cCUCGaGCGCCCAAAgcgCGGCgCCAugGg -3' miRNA: 3'- -GAGC-CGCGGGUUUga-GCCGaGGUugU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 233999 | 0.77 | 0.403542 |
Target: 5'- cCUCGGCGCCCuccuggucuggaUCGGCUCCGGu- -3' miRNA: 3'- -GAGCCGCGGGuuug--------AGCCGAGGUUgu -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 120927 | 0.76 | 0.472368 |
Target: 5'- -gCGGCuGCCCGcGGCggCGGCUCCGGCGa -3' miRNA: 3'- gaGCCG-CGGGU-UUGa-GCCGAGGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 74189 | 0.74 | 0.567046 |
Target: 5'- -gCGGCGCCCGGcGCgCGGC-CCGACGc -3' miRNA: 3'- gaGCCGCGGGUU-UGaGCCGaGGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 148647 | 0.74 | 0.58666 |
Target: 5'- -aCGGC-CCCGAGCUCGGCggggauggccgCCAACc -3' miRNA: 3'- gaGCCGcGGGUUUGAGCCGa----------GGUUGu -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 240061 | 0.74 | 0.58666 |
Target: 5'- -aUGGCGCCU--GCUUGGCcUCCGGCGu -3' miRNA: 3'- gaGCCGCGGGuuUGAGCCG-AGGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 132608 | 0.73 | 0.596516 |
Target: 5'- gUCGGCGUCCGcaacggcuuccaGACUCGGCggCGGCGc -3' miRNA: 3'- gAGCCGCGGGU------------UUGAGCCGagGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 101505 | 0.73 | 0.606397 |
Target: 5'- -gCGGCGgCCAGACgCGGCcgaCCAGCAg -3' miRNA: 3'- gaGCCGCgGGUUUGaGCCGa--GGUUGU- -5' |
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13987 | 5' | -56.7 | NC_003521.1 | + | 145276 | 0.73 | 0.606397 |
Target: 5'- cCUCGGCGgCC-AGCUCGcGCgCCGGCGu -3' miRNA: 3'- -GAGCCGCgGGuUUGAGC-CGaGGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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