miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 201416 1.08 0.0046
Target:  5'- uCUCGGCGCCCAAACUCGGCUCCAACAu -3'
miRNA:   3'- -GAGCCGCGGGUUUGAGCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 127270 0.81 0.25964
Target:  5'- -aUGGCGCCCAGGCgCGGCacgUCCGACAc -3'
miRNA:   3'- gaGCCGCGGGUUUGaGCCG---AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 175967 0.8 0.265694
Target:  5'- gUCGGCGCCCAcgUUCaGCUUCAGCAu -3'
miRNA:   3'- gAGCCGCGGGUuuGAGcCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 233999 0.77 0.403542
Target:  5'- cCUCGGCGCCCuccuggucuggaUCGGCUCCGGu- -3'
miRNA:   3'- -GAGCCGCGGGuuug--------AGCCGAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 120927 0.76 0.472368
Target:  5'- -gCGGCuGCCCGcGGCggCGGCUCCGGCGa -3'
miRNA:   3'- gaGCCG-CGGGU-UUGa-GCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 201383 0.75 0.490724
Target:  5'- cCUCGGCG-CCGGGCUCGGCcggCAGCGg -3'
miRNA:   3'- -GAGCCGCgGGUUUGAGCCGag-GUUGU- -5'
13987 5' -56.7 NC_003521.1 + 119804 0.74 0.547603
Target:  5'- gUCGGCGCCgCcgaggaggucugGAGCagCGGCUCCGACu -3'
miRNA:   3'- gAGCCGCGG-G------------UUUGa-GCCGAGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 74189 0.74 0.567046
Target:  5'- -gCGGCGCCCGGcGCgCGGC-CCGACGc -3'
miRNA:   3'- gaGCCGCGGGUU-UGaGCCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 39834 0.74 0.58666
Target:  5'- -aUGGCGCCU--GCUUGGCcUCCGGCGu -3'
miRNA:   3'- gaGCCGCGGGuuUGAGCCG-AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 240061 0.74 0.58666
Target:  5'- -aUGGCGCCU--GCUUGGCcUCCGGCGu -3'
miRNA:   3'- gaGCCGCGGGuuUGAGCCG-AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 148647 0.74 0.58666
Target:  5'- -aCGGC-CCCGAGCUCGGCggggauggccgCCAACc -3'
miRNA:   3'- gaGCCGcGGGUUUGAGCCGa----------GGUUGu -5'
13987 5' -56.7 NC_003521.1 + 132608 0.73 0.596516
Target:  5'- gUCGGCGUCCGcaacggcuuccaGACUCGGCggCGGCGc -3'
miRNA:   3'- gAGCCGCGGGU------------UUGAGCCGagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 101505 0.73 0.606397
Target:  5'- -gCGGCGgCCAGACgCGGCcgaCCAGCAg -3'
miRNA:   3'- gaGCCGCgGGUUUGaGCCGa--GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 145276 0.73 0.606397
Target:  5'- cCUCGGCGgCC-AGCUCGcGCgCCGGCGu -3'
miRNA:   3'- -GAGCCGCgGGuUUGAGC-CGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 179250 0.73 0.616296
Target:  5'- -cUGGCGCCUGAACUCGcCggCCAGCAg -3'
miRNA:   3'- gaGCCGCGGGUUUGAGCcGa-GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 71046 0.73 0.616296
Target:  5'- cCUCGaGCGCCCAAAgcgCGGCgCCAugGg -3'
miRNA:   3'- -GAGC-CGCGGGUUUga-GCCGaGGUugU- -5'
13987 5' -56.7 NC_003521.1 + 225591 0.73 0.616296
Target:  5'- gCUCGGCGgCCucgcGCUCGGCcgCCuGCAg -3'
miRNA:   3'- -GAGCCGCgGGuu--UGAGCCGa-GGuUGU- -5'
13987 5' -56.7 NC_003521.1 + 39705 0.73 0.63612
Target:  5'- -aUGGUGCCCAuGGCUUGGUauUCCAGCu -3'
miRNA:   3'- gaGCCGCGGGU-UUGAGCCG--AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 239932 0.73 0.63612
Target:  5'- -aUGGUGCCCAuGGCUUGGUauUCCAGCu -3'
miRNA:   3'- gaGCCGCGGGU-UUGAGCCG--AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 220184 0.73 0.63612
Target:  5'- --aGGCGCCCAccAGCgcgCGGCUCUccgAGCAc -3'
miRNA:   3'- gagCCGCGGGU--UUGa--GCCGAGG---UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.