miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 3' -63.9 NC_003521.1 + 141285 0.66 0.700956
Target:  5'- -cCGCCuCCGCgaCAGGuGCAGGugCGg -3'
miRNA:   3'- cuGCGGcGGUGg-GUCC-CGUCCugGCg -5'
13988 3' -63.9 NC_003521.1 + 70060 0.66 0.700956
Target:  5'- uGCaCCGCCugUCGGGccagcacguacaGCGGGuuGCCGCa -3'
miRNA:   3'- cUGcGGCGGugGGUCC------------CGUCC--UGGCG- -5'
13988 3' -63.9 NC_003521.1 + 56028 0.66 0.700956
Target:  5'- gGAgGCgGCCA-CCAGGGCGuccaGGCgCGCg -3'
miRNA:   3'- -CUgCGgCGGUgGGUCCCGUc---CUG-GCG- -5'
13988 3' -63.9 NC_003521.1 + 91763 0.66 0.700956
Target:  5'- aGCGCgGCCgcgucgaaGCCCAGcGCGGGcACgGCc -3'
miRNA:   3'- cUGCGgCGG--------UGGGUCcCGUCC-UGgCG- -5'
13988 3' -63.9 NC_003521.1 + 117663 0.66 0.700956
Target:  5'- -cCGCCGCCACCuCAGcaGCAGcACCa- -3'
miRNA:   3'- cuGCGGCGGUGG-GUCc-CGUCcUGGcg -5'
13988 3' -63.9 NC_003521.1 + 72287 0.66 0.700956
Target:  5'- aGCGCCGCCGCCgc--GCuGG-CCGCc -3'
miRNA:   3'- cUGCGGCGGUGGguccCGuCCuGGCG- -5'
13988 3' -63.9 NC_003521.1 + 7654 0.66 0.700956
Target:  5'- --gGCgGCCGCCaCGGcGGCGcGGACaGCg -3'
miRNA:   3'- cugCGgCGGUGG-GUC-CCGU-CCUGgCG- -5'
13988 3' -63.9 NC_003521.1 + 129625 0.66 0.700956
Target:  5'- -uCGCCgGCCGCCC--GGCGGGugCu- -3'
miRNA:   3'- cuGCGG-CGGUGGGucCCGUCCugGcg -5'
13988 3' -63.9 NC_003521.1 + 204117 0.66 0.700956
Target:  5'- uGCGCCuCCACCUgcucGGGCcAGGcGCCGg -3'
miRNA:   3'- cUGCGGcGGUGGGu---CCCG-UCC-UGGCg -5'
13988 3' -63.9 NC_003521.1 + 226935 0.66 0.700956
Target:  5'- cGCGCCggGCCcCCCGGcgaaauccauGGCGGcGCCGCc -3'
miRNA:   3'- cUGCGG--CGGuGGGUC----------CCGUCcUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 222545 0.66 0.700956
Target:  5'- uGCGgUGCgGCCCucccgucgcGGGCAGGuccccaccACCGCu -3'
miRNA:   3'- cUGCgGCGgUGGGu--------CCCGUCC--------UGGCG- -5'
13988 3' -63.9 NC_003521.1 + 114412 0.66 0.700956
Target:  5'- --gGCCGCCAUCgcgCAGGGCcGaGACCuGUg -3'
miRNA:   3'- cugCGGCGGUGG---GUCCCGuC-CUGG-CG- -5'
13988 3' -63.9 NC_003521.1 + 139597 0.66 0.700956
Target:  5'- uGGCGCCGCgGCaCCAGGaacacGguGGccuuCUGCu -3'
miRNA:   3'- -CUGCGGCGgUG-GGUCC-----CguCCu---GGCG- -5'
13988 3' -63.9 NC_003521.1 + 114511 0.66 0.700956
Target:  5'- cGugGCCGCCguGCCCAccgccgccacGGGCAccaucGAuuuCCGCu -3'
miRNA:   3'- -CugCGGCGG--UGGGU----------CCCGUc----CU---GGCG- -5'
13988 3' -63.9 NC_003521.1 + 46054 0.66 0.700956
Target:  5'- uGACGuuGgCACC--GGGCGGGAugaggUCGCg -3'
miRNA:   3'- -CUGCggCgGUGGguCCCGUCCU-----GGCG- -5'
13988 3' -63.9 NC_003521.1 + 201542 0.66 0.70003
Target:  5'- uGACGCCGCUgacggugACCCGGaGUucGGACUGg -3'
miRNA:   3'- -CUGCGGCGG-------UGGGUCcCGu-CCUGGCg -5'
13988 3' -63.9 NC_003521.1 + 101952 0.66 0.70003
Target:  5'- cGugGCCGCCGugauCCacgcagaAGGuGCAGcccaucuGGCCGCa -3'
miRNA:   3'- -CugCGGCGGU----GGg------UCC-CGUC-------CUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 86788 0.66 0.698177
Target:  5'- gGGCGCCuGCCGCggcaagagcaugcaCCAGGuGCugcGGACCcguGCg -3'
miRNA:   3'- -CUGCGG-CGGUG--------------GGUCC-CGu--CCUGG---CG- -5'
13988 3' -63.9 NC_003521.1 + 117454 0.66 0.698177
Target:  5'- --aGCCGCCugUCGGuGCGGcugucggaggccacGGCCGCg -3'
miRNA:   3'- cugCGGCGGugGGUCcCGUC--------------CUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 18953 0.66 0.695394
Target:  5'- cACGCC-CUACCCagcgacaacgaggagGGGGUcgAGGACgCGCc -3'
miRNA:   3'- cUGCGGcGGUGGG---------------UCCCG--UCCUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.