miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 90580 0.66 0.98253
Target:  5'- uGCAGG---CCGAcGUGAcguGCUCGGAGa -3'
miRNA:   3'- -CGUCCugaGGCUaCGCU---UGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 36412 0.66 0.98253
Target:  5'- cGCGGGGCgUgGAUuucGCGG--UCGGAGGg -3'
miRNA:   3'- -CGUCCUGaGgCUA---CGCUugAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 36692 0.67 0.980343
Target:  5'- gGCcGGGCUCCGgcGCcuggcccGAGCaggUGGAGGc -3'
miRNA:   3'- -CGuCCUGAGGCuaCG-------CUUGa--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 148476 0.67 0.980343
Target:  5'- gGCAGGACggaggguUCCGGgaGCGAgGCgggCGGAuGGg -3'
miRNA:   3'- -CGUCCUG-------AGGCUa-CGCU-UGa--GCCU-CC- -5'
13988 5' -54.4 NC_003521.1 + 11877 0.67 0.979924
Target:  5'- aGgAGGACUCCGAgGaCGAggauuucuuucucuACgUGGAGGa -3'
miRNA:   3'- -CgUCCUGAGGCUaC-GCU--------------UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 113356 0.67 0.978406
Target:  5'- aGgGGGACgggCCGGggGCGAGga-GGAGGg -3'
miRNA:   3'- -CgUCCUGa--GGCUa-CGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 240556 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 5647 0.67 0.976093
Target:  5'- cGUGGGAUUCCaccauGAcGCGAcgccaaucgcGCUCGGAGu -3'
miRNA:   3'- -CGUCCUGAGG-----CUaCGCU----------UGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 18468 0.67 0.976093
Target:  5'- cGCGGG-CUgCGcgGCGAgugucGCcUGGAGGa -3'
miRNA:   3'- -CGUCCuGAgGCuaCGCU-----UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 75870 0.67 0.976093
Target:  5'- -gAGGGCccucUCCGGcgacGCGAGCcgcCGGAGGa -3'
miRNA:   3'- cgUCCUG----AGGCUa---CGCUUGa--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 40329 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 7 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 70237 0.67 0.973603
Target:  5'- aGCAGGGCUaggcaggGCGAGCUgGuGGGGu -3'
miRNA:   3'- -CGUCCUGAggcua--CGCUUGAgC-CUCC- -5'
13988 5' -54.4 NC_003521.1 + 4187 0.67 0.97093
Target:  5'- aGgAGGACUCUcucUGgGAGCUgaaagCGGAGGg -3'
miRNA:   3'- -CgUCCUGAGGcu-ACgCUUGA-----GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 119362 0.68 0.968069
Target:  5'- cGCuGGGCUCCGA--CGAGga-GGAGGa -3'
miRNA:   3'- -CGuCCUGAGGCUacGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 36236 0.68 0.968069
Target:  5'- aGCAGGACUaCCGAcugccgGCGcGCgacgUGGuGGa -3'
miRNA:   3'- -CGUCCUGA-GGCUa-----CGCuUGa---GCCuCC- -5'
13988 5' -54.4 NC_003521.1 + 53385 0.68 0.961421
Target:  5'- aGCAGGAgcaggCCGcgGCGAGCaggggauggcgcgUCGGcAGGu -3'
miRNA:   3'- -CGUCCUga---GGCuaCGCUUG-------------AGCC-UCC- -5'
13988 5' -54.4 NC_003521.1 + 12994 0.68 0.95463
Target:  5'- -aGGGACUCUG-UGUGuacuACUCGGAcgaGGa -3'
miRNA:   3'- cgUCCUGAGGCuACGCu---UGAGCCU---CC- -5'
13988 5' -54.4 NC_003521.1 + 123643 0.68 0.950749
Target:  5'- gGCGGcGGCagCGAcgGCGGguuagGCUUGGAGGg -3'
miRNA:   3'- -CGUC-CUGagGCUa-CGCU-----UGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 103687 0.69 0.946653
Target:  5'- gGCGGGcgaguccgaGCgUCCGAacGCGGGCUCGGAa- -3'
miRNA:   3'- -CGUCC---------UG-AGGCUa-CGCUUGAGCCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.