miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 57198 0.66 0.984179
Target:  5'- cGCAGGgagucaucgcacaACUCgGAgGCGuAGCUCaGAGGc -3'
miRNA:   3'- -CGUCC-------------UGAGgCUaCGC-UUGAGcCUCC- -5'
13988 5' -54.4 NC_003521.1 + 60856 0.66 0.988968
Target:  5'- cGCAGGugUUCGcgcagcugGUGUGGugccgcaguuCUCGGAGa -3'
miRNA:   3'- -CGUCCugAGGC--------UACGCUu---------GAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 70237 0.67 0.973603
Target:  5'- aGCAGGGCUaggcaggGCGAGCUgGuGGGGu -3'
miRNA:   3'- -CGUCCUGAggcua--CGCUUGAgC-CUCC- -5'
13988 5' -54.4 NC_003521.1 + 72715 0.71 0.866193
Target:  5'- cCAGGACcCCGG-GCGcGugUUGGAGGg -3'
miRNA:   3'- cGUCCUGaGGCUaCGC-UugAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 75870 0.67 0.976093
Target:  5'- -gAGGGCccucUCCGGcgacGCGAGCcgcCGGAGGa -3'
miRNA:   3'- cgUCCUG----AGGCUa---CGCUUGa--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 76700 0.79 0.496392
Target:  5'- aGC-GGAUUCC--UGCGAAUUCGGAGGa -3'
miRNA:   3'- -CGuCCUGAGGcuACGCUUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 85830 0.66 0.988968
Target:  5'- cCAGGGCUUCGGucUGCG---UCGGGGa -3'
miRNA:   3'- cGUCCUGAGGCU--ACGCuugAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 86254 0.74 0.739113
Target:  5'- uGCAGGGCgaagucggCCGGcgagGCGAAgUUGGGGGu -3'
miRNA:   3'- -CGUCCUGa-------GGCUa---CGCUUgAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 90580 0.66 0.98253
Target:  5'- uGCAGG---CCGAcGUGAcguGCUCGGAGa -3'
miRNA:   3'- -CGUCCugaGGCUaCGCU---UGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 95897 0.66 0.98712
Target:  5'- gGCGGGGaaugaucguCUCCGAUGCGggUUgugguuucccgagcCGGAu- -3'
miRNA:   3'- -CGUCCU---------GAGGCUACGCuuGA--------------GCCUcc -5'
13988 5' -54.4 NC_003521.1 + 101842 0.66 0.98253
Target:  5'- gGCGGG-CUCCGGguUGUGGAUggCGGAc- -3'
miRNA:   3'- -CGUCCuGAGGCU--ACGCUUGa-GCCUcc -5'
13988 5' -54.4 NC_003521.1 + 102682 0.66 0.98712
Target:  5'- aGCAGGucgaaggggaacauGCUgCGGUGCcagguCUCGGAGa -3'
miRNA:   3'- -CGUCC--------------UGAgGCUACGcuu--GAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 103490 0.66 0.987566
Target:  5'- aGCGGG-C-CCGcgugauagGUGAACUCGGGGu -3'
miRNA:   3'- -CGUCCuGaGGCua------CGCUUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 103687 0.69 0.946653
Target:  5'- gGCGGGcgaguccgaGCgUCCGAacGCGGGCUCGGAa- -3'
miRNA:   3'- -CGUCC---------UG-AGGCUa-CGCUUGAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 105625 0.7 0.905916
Target:  5'- aGCAGGGCgugCuCGGgcgugUGCGugaagcccAGCUCGGGGGu -3'
miRNA:   3'- -CGUCCUGa--G-GCU-----ACGC--------UUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 106806 0.66 0.988968
Target:  5'- -uGGGAgagaaguuCUCC---GCGAACUCGGAGa -3'
miRNA:   3'- cgUCCU--------GAGGcuaCGCUUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 113356 0.67 0.978406
Target:  5'- aGgGGGACgggCCGGggGCGAGga-GGAGGg -3'
miRNA:   3'- -CgUCCUGa--GGCUa-CGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 113898 0.7 0.92233
Target:  5'- aGCAGGuaggcgaGCUgCUGA-GCGAGCUggUGGAGGa -3'
miRNA:   3'- -CGUCC-------UGA-GGCUaCGCUUGA--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 119362 0.68 0.968069
Target:  5'- cGCuGGGCUCCGA--CGAGga-GGAGGa -3'
miRNA:   3'- -CGuCCUGAGGCUacGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 123643 0.68 0.950749
Target:  5'- gGCGGcGGCagCGAcgGCGGguuagGCUUGGAGGg -3'
miRNA:   3'- -CGUC-CUGagGCUa-CGCU-----UGAGCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.