miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 7 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 101 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 4187 0.67 0.97093
Target:  5'- aGgAGGACUCUcucUGgGAGCUgaaagCGGAGGg -3'
miRNA:   3'- -CgUCCUGAGGcu-ACgCUUGA-----GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 5647 0.67 0.976093
Target:  5'- cGUGGGAUUCCaccauGAcGCGAcgccaaucgcGCUCGGAGu -3'
miRNA:   3'- -CGUCCUGAGG-----CUaCGCU----------UGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 9077 0.72 0.826845
Target:  5'- cGCAGGAgUCCGGaauccagUGaagGAGC-CGGAGGa -3'
miRNA:   3'- -CGUCCUgAGGCU-------ACg--CUUGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 11877 0.67 0.979924
Target:  5'- aGgAGGACUCCGAgGaCGAggauuucuuucucuACgUGGAGGa -3'
miRNA:   3'- -CgUCCUGAGGCUaC-GCU--------------UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 12994 0.68 0.95463
Target:  5'- -aGGGACUCUG-UGUGuacuACUCGGAcgaGGa -3'
miRNA:   3'- cgUCCUGAGGCuACGCu---UGAGCCU---CC- -5'
13988 5' -54.4 NC_003521.1 + 18468 0.67 0.976093
Target:  5'- cGCGGG-CUgCGcgGCGAgugucGCcUGGAGGa -3'
miRNA:   3'- -CGUCCuGAgGCuaCGCU-----UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 24435 0.69 0.937803
Target:  5'- cGCAGGGg-CCG--GCGGGCUCGGAa- -3'
miRNA:   3'- -CGUCCUgaGGCuaCGCUUGAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 27579 0.7 0.89352
Target:  5'- cGCGucGGACUCCGAUGCGGucuGCUCu---- -3'
miRNA:   3'- -CGU--CCUGAGGCUACGCU---UGAGccucc -5'
13988 5' -54.4 NC_003521.1 + 36236 0.68 0.968069
Target:  5'- aGCAGGACUaCCGAcugccgGCGcGCgacgUGGuGGa -3'
miRNA:   3'- -CGUCCUGA-GGCUa-----CGCuUGa---GCCuCC- -5'
13988 5' -54.4 NC_003521.1 + 36412 0.66 0.98253
Target:  5'- cGCGGGGCgUgGAUuucGCGG--UCGGAGGg -3'
miRNA:   3'- -CGUCCUGaGgCUA---CGCUugAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 36692 0.67 0.980343
Target:  5'- gGCcGGGCUCCGgcGCcuggcccGAGCaggUGGAGGc -3'
miRNA:   3'- -CGuCCUGAGGCuaCG-------CUUGa--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 37207 0.66 0.984355
Target:  5'- cGgGGGAC-CgCGGUuagGCGGcCUCGGGGGu -3'
miRNA:   3'- -CgUCCUGaG-GCUA---CGCUuGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 38227 0.7 0.89352
Target:  5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3'
miRNA:   3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5'
13988 5' -54.4 NC_003521.1 + 40329 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 40423 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 44252 0.7 0.911786
Target:  5'- cGCGGGAgUCCG--GCGucacGC-CGGAGGa -3'
miRNA:   3'- -CGUCCUgAGGCuaCGCu---UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 49069 0.66 0.988968
Target:  5'- aCAGGAC-CCGGUGgaccguCGGACg-GGGGGc -3'
miRNA:   3'- cGUCCUGaGGCUAC------GCUUGagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 53385 0.68 0.961421
Target:  5'- aGCAGGAgcaggCCGcgGCGAGCaggggauggcgcgUCGGcAGGu -3'
miRNA:   3'- -CGUCCUga---GGCuaCGCUUG-------------AGCC-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.