miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 201259 1.13 0.004245
Target:  5'- gGCAGGACUCCGAUGCGAACUCGGAGGg -3'
miRNA:   3'- -CGUCCUGAGGCUACGCUUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 76700 0.79 0.496392
Target:  5'- aGC-GGAUUCC--UGCGAAUUCGGAGGa -3'
miRNA:   3'- -CGuCCUGAGGcuACGCUUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 187615 0.77 0.592464
Target:  5'- cGC-GGACUCCcg-GCGAGCUCaccGGAGGg -3'
miRNA:   3'- -CGuCCUGAGGcuaCGCUUGAG---CCUCC- -5'
13988 5' -54.4 NC_003521.1 + 235582 0.75 0.689107
Target:  5'- cGCGGGACgugcgggaggaCGAgagGCGGACUCGGGcGGa -3'
miRNA:   3'- -CGUCCUGag---------GCUa--CGCUUGAGCCU-CC- -5'
13988 5' -54.4 NC_003521.1 + 209576 0.75 0.69106
Target:  5'- gGCGGGGgUCCGGggGCGcACguagCGGAGGu -3'
miRNA:   3'- -CGUCCUgAGGCUa-CGCuUGa---GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 86254 0.74 0.739113
Target:  5'- uGCAGGGCgaagucggCCGGcgagGCGAAgUUGGGGGu -3'
miRNA:   3'- -CGUCCUGa-------GGCUa---CGCUUgAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 169621 0.74 0.757783
Target:  5'- -gGGGACgaggCgGAUGCGAAUUCgaGGAGGu -3'
miRNA:   3'- cgUCCUGa---GgCUACGCUUGAG--CCUCC- -5'
13988 5' -54.4 NC_003521.1 + 171420 0.73 0.801634
Target:  5'- aGCAGGagGCUCaCGGUGCGAuugaggaGCagGGGGGu -3'
miRNA:   3'- -CGUCC--UGAG-GCUACGCU-------UGagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 9077 0.72 0.826845
Target:  5'- cGCAGGAgUCCGGaauccagUGaagGAGC-CGGAGGa -3'
miRNA:   3'- -CGUCCUgAGGCU-------ACg--CUUGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 157028 0.72 0.843618
Target:  5'- aGCAGGuuUCgGggGCGcGgUCGGAGGa -3'
miRNA:   3'- -CGUCCugAGgCuaCGCuUgAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 172422 0.72 0.85133
Target:  5'- cGCGGGAC-CCGAgGCGGA---GGAGGa -3'
miRNA:   3'- -CGUCCUGaGGCUaCGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 133509 0.71 0.866193
Target:  5'- uGCGGGGCccaacCCGcgGCGA-UUCGGAGa -3'
miRNA:   3'- -CGUCCUGa----GGCuaCGCUuGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 72715 0.71 0.866193
Target:  5'- cCAGGACcCCGG-GCGcGugUUGGAGGg -3'
miRNA:   3'- cGUCCUGaGGCUaCGC-UugAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 27579 0.7 0.89352
Target:  5'- cGCGucGGACUCCGAUGCGGucuGCUCu---- -3'
miRNA:   3'- -CGU--CCUGAGGCUACGCU---UGAGccucc -5'
13988 5' -54.4 NC_003521.1 + 38227 0.7 0.89352
Target:  5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3'
miRNA:   3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5'
13988 5' -54.4 NC_003521.1 + 238455 0.7 0.89352
Target:  5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3'
miRNA:   3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5'
13988 5' -54.4 NC_003521.1 + 105625 0.7 0.905916
Target:  5'- aGCAGGGCgugCuCGGgcgugUGCGugaagcccAGCUCGGGGGu -3'
miRNA:   3'- -CGUCCUGa--G-GCU-----ACGC--------UUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 165116 0.7 0.911786
Target:  5'- aGCGGcGGCUgUGGUGCGGA--CGGGGGc -3'
miRNA:   3'- -CGUC-CUGAgGCUACGCUUgaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 44252 0.7 0.911786
Target:  5'- cGCGGGAgUCCG--GCGucacGC-CGGAGGa -3'
miRNA:   3'- -CGUCCUgAGGCuaCGCu---UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 113898 0.7 0.92233
Target:  5'- aGCAGGuaggcgaGCUgCUGA-GCGAGCUggUGGAGGa -3'
miRNA:   3'- -CGUCC-------UGA-GGCUaCGCUUGA--GCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.