miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 240650 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 36236 0.68 0.968069
Target:  5'- aGCAGGACUaCCGAcugccgGCGcGCgacgUGGuGGa -3'
miRNA:   3'- -CGUCCUGA-GGCUa-----CGCuUGa---GCCuCC- -5'
13988 5' -54.4 NC_003521.1 + 70237 0.67 0.973603
Target:  5'- aGCAGGGCUaggcaggGCGAGCUgGuGGGGu -3'
miRNA:   3'- -CGUCCUGAggcua--CGCUUGAgC-CUCC- -5'
13988 5' -54.4 NC_003521.1 + 7 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 240556 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 113356 0.67 0.978406
Target:  5'- aGgGGGACgggCCGGggGCGAGga-GGAGGg -3'
miRNA:   3'- -CgUCCUGa--GGCUa-CGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 57198 0.66 0.984179
Target:  5'- cGCAGGgagucaucgcacaACUCgGAgGCGuAGCUCaGAGGc -3'
miRNA:   3'- -CGUCC-------------UGAGgCUaCGC-UUGAGcCUCC- -5'
13988 5' -54.4 NC_003521.1 + 101 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 142705 0.66 0.986031
Target:  5'- --cGGACUCCGcgccGCGAGucCUCGGAc- -3'
miRNA:   3'- cguCCUGAGGCua--CGCUU--GAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 24435 0.69 0.937803
Target:  5'- cGCAGGGg-CCG--GCGGGCUCGGAa- -3'
miRNA:   3'- -CGUCCUgaGGCuaCGCUUGAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 221573 0.69 0.928066
Target:  5'- cGUuGGACaUCUGAU-CGGGCUCGGGGa -3'
miRNA:   3'- -CGuCCUG-AGGCUAcGCUUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 44252 0.7 0.911786
Target:  5'- cGCGGGAgUCCG--GCGucacGC-CGGAGGa -3'
miRNA:   3'- -CGUCCUgAGGCuaCGCu---UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 235582 0.75 0.689107
Target:  5'- cGCGGGACgugcgggaggaCGAgagGCGGACUCGGGcGGa -3'
miRNA:   3'- -CGUCCUGag---------GCUa--CGCUUGAGCCU-CC- -5'
13988 5' -54.4 NC_003521.1 + 209576 0.75 0.69106
Target:  5'- gGCGGGGgUCCGGggGCGcACguagCGGAGGu -3'
miRNA:   3'- -CGUCCUgAGGCUa-CGCuUGa---GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 86254 0.74 0.739113
Target:  5'- uGCAGGGCgaagucggCCGGcgagGCGAAgUUGGGGGu -3'
miRNA:   3'- -CGUCCUGa-------GGCUa---CGCUUgAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 171420 0.73 0.801634
Target:  5'- aGCAGGagGCUCaCGGUGCGAuugaggaGCagGGGGGu -3'
miRNA:   3'- -CGUCC--UGAG-GCUACGCU-------UGagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 133509 0.71 0.866193
Target:  5'- uGCGGGGCccaacCCGcgGCGA-UUCGGAGa -3'
miRNA:   3'- -CGUCCUGa----GGCuaCGCUuGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 238455 0.7 0.89352
Target:  5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3'
miRNA:   3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5'
13988 5' -54.4 NC_003521.1 + 27579 0.7 0.89352
Target:  5'- cGCGucGGACUCCGAUGCGGucuGCUCu---- -3'
miRNA:   3'- -CGU--CCUGAGGCUACGCU---UGAGccucc -5'
13988 5' -54.4 NC_003521.1 + 105625 0.7 0.905916
Target:  5'- aGCAGGGCgugCuCGGgcgugUGCGugaagcccAGCUCGGGGGu -3'
miRNA:   3'- -CGUCCUGa--G-GCU-----ACGC--------UUGAGCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.