miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 201259 1.13 0.004245
Target:  5'- gGCAGGACUCCGAUGCGAACUCGGAGGg -3'
miRNA:   3'- -CGUCCUGAGGCUACGCUUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 5647 0.67 0.976093
Target:  5'- cGUGGGAUUCCaccauGAcGCGAcgccaaucgcGCUCGGAGu -3'
miRNA:   3'- -CGUCCUGAGG-----CUaCGCU----------UGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 40329 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 147670 0.66 0.988968
Target:  5'- -aGGGACgUCGA-GCGAcgGC-CGGAGGu -3'
miRNA:   3'- cgUCCUGaGGCUaCGCU--UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 157028 0.72 0.843618
Target:  5'- aGCAGGuuUCgGggGCGcGgUCGGAGGa -3'
miRNA:   3'- -CGUCCugAGgCuaCGCuUgAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 172422 0.72 0.85133
Target:  5'- cGCGGGAC-CCGAgGCGGA---GGAGGa -3'
miRNA:   3'- -CGUCCUGaGGCUaCGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 38227 0.7 0.89352
Target:  5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3'
miRNA:   3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5'
13988 5' -54.4 NC_003521.1 + 165116 0.7 0.911786
Target:  5'- aGCGGcGGCUgUGGUGCGGA--CGGGGGc -3'
miRNA:   3'- -CGUC-CUGAgGCUACGCUUgaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 103687 0.69 0.946653
Target:  5'- gGCGGGcgaguccgaGCgUCCGAacGCGGGCUCGGAa- -3'
miRNA:   3'- -CGUCC---------UG-AGGCUa-CGCUUGAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 4187 0.67 0.97093
Target:  5'- aGgAGGACUCUcucUGgGAGCUgaaagCGGAGGg -3'
miRNA:   3'- -CgUCCUGAGGcu-ACgCUUGA-----GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 12994 0.68 0.95463
Target:  5'- -aGGGACUCUG-UGUGuacuACUCGGAcgaGGa -3'
miRNA:   3'- cgUCCUGAGGCuACGCu---UGAGCCU---CC- -5'
13988 5' -54.4 NC_003521.1 + 139248 0.69 0.933046
Target:  5'- aCGGGGCUCCucgcGCGGAg-CGGGGGg -3'
miRNA:   3'- cGUCCUGAGGcua-CGCUUgaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 76700 0.79 0.496392
Target:  5'- aGC-GGAUUCC--UGCGAAUUCGGAGGa -3'
miRNA:   3'- -CGuCCUGAGGcuACGCUUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 53385 0.68 0.961421
Target:  5'- aGCAGGAgcaggCCGcgGCGAGCaggggauggcgcgUCGGcAGGu -3'
miRNA:   3'- -CGUCCUga---GGCuaCGCUUG-------------AGCC-UCC- -5'
13988 5' -54.4 NC_003521.1 + 169621 0.74 0.757783
Target:  5'- -gGGGACgaggCgGAUGCGAAUUCgaGGAGGu -3'
miRNA:   3'- cgUCCUGa---GgCUACGCUUGAG--CCUCC- -5'
13988 5' -54.4 NC_003521.1 + 113898 0.7 0.92233
Target:  5'- aGCAGGuaggcgaGCUgCUGA-GCGAGCUggUGGAGGa -3'
miRNA:   3'- -CGUCC-------UGA-GGCUaCGCUUGA--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 119362 0.68 0.968069
Target:  5'- cGCuGGGCUCCGA--CGAGga-GGAGGa -3'
miRNA:   3'- -CGuCCUGAGGCUacGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 18468 0.67 0.976093
Target:  5'- cGCGGG-CUgCGcgGCGAgugucGCcUGGAGGa -3'
miRNA:   3'- -CGUCCuGAgGCuaCGCU-----UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 9077 0.72 0.826845
Target:  5'- cGCAGGAgUCCGGaauccagUGaagGAGC-CGGAGGa -3'
miRNA:   3'- -CGUCCUgAGGCU-------ACg--CUUGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 72715 0.71 0.866193
Target:  5'- cCAGGACcCCGG-GCGcGugUUGGAGGg -3'
miRNA:   3'- cGUCCUGaGGCUaCGC-UugAGCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.