miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 240650 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 240556 0.67 0.976093
Target:  5'- --cGGcCUCCGcUGCGggUccCGGGGGg -3'
miRNA:   3'- cguCCuGAGGCuACGCuuGa-GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 238455 0.7 0.89352
Target:  5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3'
miRNA:   3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5'
13988 5' -54.4 NC_003521.1 + 235582 0.75 0.689107
Target:  5'- cGCGGGACgugcgggaggaCGAgagGCGGACUCGGGcGGa -3'
miRNA:   3'- -CGUCCUGag---------GCUa--CGCUUGAGCCU-CC- -5'
13988 5' -54.4 NC_003521.1 + 221573 0.69 0.928066
Target:  5'- cGUuGGACaUCUGAU-CGGGCUCGGGGa -3'
miRNA:   3'- -CGuCCUG-AGGCUAcGCUUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 209576 0.75 0.69106
Target:  5'- gGCGGGGgUCCGGggGCGcACguagCGGAGGu -3'
miRNA:   3'- -CGUCCUgAGGCUa-CGCuUGa---GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 205722 0.66 0.986662
Target:  5'- aCGGGGCucgggccgccucgaaUCCGGcaUGuCGAGCgccCGGAGGa -3'
miRNA:   3'- cGUCCUG---------------AGGCU--AC-GCUUGa--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 201259 1.13 0.004245
Target:  5'- gGCAGGACUCCGAUGCGAACUCGGAGGg -3'
miRNA:   3'- -CGUCCUGAGGCUACGCUUGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 191084 0.66 0.986031
Target:  5'- aGCGGGGCguaCGAcUGCcgcacGACUCGGGGc -3'
miRNA:   3'- -CGUCCUGag-GCU-ACGc----UUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 187615 0.77 0.592464
Target:  5'- cGC-GGACUCCcg-GCGAGCUCaccGGAGGg -3'
miRNA:   3'- -CGuCCUGAGGcuaCGCUUGAG---CCUCC- -5'
13988 5' -54.4 NC_003521.1 + 172422 0.72 0.85133
Target:  5'- cGCGGGAC-CCGAgGCGGA---GGAGGa -3'
miRNA:   3'- -CGUCCUGaGGCUaCGCUUgagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 171420 0.73 0.801634
Target:  5'- aGCAGGagGCUCaCGGUGCGAuugaggaGCagGGGGGu -3'
miRNA:   3'- -CGUCC--UGAG-GCUACGCU-------UGagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 169621 0.74 0.757783
Target:  5'- -gGGGACgaggCgGAUGCGAAUUCgaGGAGGu -3'
miRNA:   3'- cgUCCUGa---GgCUACGCUUGAG--CCUCC- -5'
13988 5' -54.4 NC_003521.1 + 165116 0.7 0.911786
Target:  5'- aGCGGcGGCUgUGGUGCGGA--CGGGGGc -3'
miRNA:   3'- -CGUC-CUGAgGCUACGCUUgaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 163893 0.66 0.988968
Target:  5'- gGCAGGug-CCGAcggUGCGuuACUCGGGu- -3'
miRNA:   3'- -CGUCCugaGGCU---ACGCu-UGAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 162667 0.66 0.987566
Target:  5'- cGCAG-ACUCCGucGUGCGAAaguaUUGGAa- -3'
miRNA:   3'- -CGUCcUGAGGC--UACGCUUg---AGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 157028 0.72 0.843618
Target:  5'- aGCAGGuuUCgGggGCGcGgUCGGAGGa -3'
miRNA:   3'- -CGUCCugAGgCuaCGCuUgAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 148476 0.67 0.980343
Target:  5'- gGCAGGACggaggguUCCGGgaGCGAgGCgggCGGAuGGg -3'
miRNA:   3'- -CGUCCUG-------AGGCUa-CGCU-UGa--GCCU-CC- -5'
13988 5' -54.4 NC_003521.1 + 147670 0.66 0.988968
Target:  5'- -aGGGACgUCGA-GCGAcgGC-CGGAGGu -3'
miRNA:   3'- cgUCCUGaGGCUaCGCU--UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 144892 0.66 0.987566
Target:  5'- -gAGGGCUCUGAUcCG-GCUCGGGa- -3'
miRNA:   3'- cgUCCUGAGGCUAcGCuUGAGCCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.