miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 3' -58.4 NC_003521.1 + 198319 0.67 0.844503
Target:  5'- gGGGUGGGGGAugGGcGGCUAAAccuguGACGGg -3'
miRNA:   3'- -UUCGCCCCCUcgCC-CCGGUUU-----UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 73139 0.67 0.844503
Target:  5'- cGGCGGGGGcAGCGGcGGCg-------- -3'
miRNA:   3'- uUCGCCCCC-UCGCC-CCGguuuuuguc -5'
13990 3' -58.4 NC_003521.1 + 188687 0.67 0.836603
Target:  5'- cGGGCGGGGGAuacGCGGGuCCcguGGCGc -3'
miRNA:   3'- -UUCGCCCCCU---CGCCCcGGuuuUUGUc -5'
13990 3' -58.4 NC_003521.1 + 69742 0.67 0.828528
Target:  5'- cGGGCGGGGaGgcGGCGGuGGCaCAAGuGCAu -3'
miRNA:   3'- -UUCGCCCC-C--UCGCC-CCG-GUUUuUGUc -5'
13990 3' -58.4 NC_003521.1 + 131209 0.67 0.828528
Target:  5'- cGGCGaGaGGGGCcGGcGCCAGAGACAGc -3'
miRNA:   3'- uUCGCcC-CCUCGcCC-CGGUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 13097 0.67 0.828528
Target:  5'- cGAG-GGGGGaAGCGGcacagaGGCCGAGAagacuACGGg -3'
miRNA:   3'- -UUCgCCCCC-UCGCC------CCGGUUUU-----UGUC- -5'
13990 3' -58.4 NC_003521.1 + 103121 0.67 0.820284
Target:  5'- -cGCGGGGuGAggcugGUGGGGagagcCCAGGGGCAGc -3'
miRNA:   3'- uuCGCCCC-CU-----CGCCCC-----GGUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 7727 0.67 0.820284
Target:  5'- uGGGUGGGGaGGGCGGcGCgAGcgGCGGa -3'
miRNA:   3'- -UUCGCCCC-CUCGCCcCGgUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 164068 0.67 0.820284
Target:  5'- gGAG-GaGGGGAGaaCGGGGUCGGugGCAGg -3'
miRNA:   3'- -UUCgC-CCCCUC--GCCCCGGUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 668 0.67 0.820284
Target:  5'- -cGCGGaGGAGgGGGGCUAuauAACGc -3'
miRNA:   3'- uuCGCCcCCUCgCCCCGGUuu-UUGUc -5'
13990 3' -58.4 NC_003521.1 + 132992 0.67 0.81188
Target:  5'- --aCGGGGGAcCGGGGUugggaCGGGGACAGc -3'
miRNA:   3'- uucGCCCCCUcGCCCCG-----GUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 69137 0.67 0.81188
Target:  5'- cGGUGGGuGGcAGCGGGGCgGuguACAu -3'
miRNA:   3'- uUCGCCC-CC-UCGCCCCGgUuuuUGUc -5'
13990 3' -58.4 NC_003521.1 + 193188 0.67 0.809328
Target:  5'- gGAGCGGcGGAGCgugaagaagcgagaGGGGCaguagcagCAAGAGCAGc -3'
miRNA:   3'- -UUCGCCcCCUCG--------------CCCCG--------GUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 99950 0.67 0.803322
Target:  5'- -cGCaGGGGGGCGGcggcgccucGGCCGAGAccGCGa -3'
miRNA:   3'- uuCGcCCCCUCGCC---------CCGGUUUU--UGUc -5'
13990 3' -58.4 NC_003521.1 + 100435 0.67 0.803322
Target:  5'- gAAGCGGcggcgcucGGGAGCaGGGCCGccgaAGAAgAGu -3'
miRNA:   3'- -UUCGCC--------CCCUCGcCCCGGU----UUUUgUC- -5'
13990 3' -58.4 NC_003521.1 + 7993 0.68 0.794619
Target:  5'- cGGCGGGGGAGguacCGGGGCa-------- -3'
miRNA:   3'- uUCGCCCCCUC----GCCCCGguuuuuguc -5'
13990 3' -58.4 NC_003521.1 + 71279 0.68 0.794619
Target:  5'- gAGGCGGGGGccGCGgcacGGGCCccuGGGGCAc -3'
miRNA:   3'- -UUCGCCCCCu-CGC----CCCGGu--UUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 160512 0.68 0.794619
Target:  5'- cGGCGGGaGGAGgGGGcggcaGCCuccucguacgcGGAGACAGa -3'
miRNA:   3'- uUCGCCC-CCUCgCCC-----CGG-----------UUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 131108 0.68 0.785777
Target:  5'- cGGCGGGGcGGCGcGGcuGCCGGGAAgGGa -3'
miRNA:   3'- uUCGCCCCcUCGC-CC--CGGUUUUUgUC- -5'
13990 3' -58.4 NC_003521.1 + 150513 0.68 0.776805
Target:  5'- cGGCGGGgcccugcuaGGAGCGGGaGCCGugggguccGGCGGu -3'
miRNA:   3'- uUCGCCC---------CCUCGCCC-CGGUuu------UUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.