miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 3' -58.4 NC_003521.1 + 69742 0.67 0.828528
Target:  5'- cGGGCGGGGaGgcGGCGGuGGCaCAAGuGCAu -3'
miRNA:   3'- -UUCGCCCC-C--UCGCC-CCG-GUUUuUGUc -5'
13990 3' -58.4 NC_003521.1 + 71279 0.68 0.794619
Target:  5'- gAGGCGGGGGccGCGgcacGGGCCccuGGGGCAc -3'
miRNA:   3'- -UUCGCCCCCu-CGC----CCCGGu--UUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 71443 0.66 0.881165
Target:  5'- gAGGCGGGGaucGCGGGG--GAAGACAu -3'
miRNA:   3'- -UUCGCCCCcu-CGCCCCggUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 73139 0.67 0.844503
Target:  5'- cGGCGGGGGcAGCGGcGGCg-------- -3'
miRNA:   3'- uUCGCCCCC-UCGCC-CCGguuuuuguc -5'
13990 3' -58.4 NC_003521.1 + 89718 0.69 0.720709
Target:  5'- aGAGCGGGuGGaAGaCGuGGGCaCGGGGGCGGu -3'
miRNA:   3'- -UUCGCCC-CC-UC-GC-CCCG-GUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 91365 0.78 0.269085
Target:  5'- cGGUGGGGGAG-GGGGCCGAAcccCGGg -3'
miRNA:   3'- uUCGCCCCCUCgCCCCGGUUUuu-GUC- -5'
13990 3' -58.4 NC_003521.1 + 91492 0.66 0.867091
Target:  5'- uGGGUGGGGGA-UGGGcaCCAAcAACAGg -3'
miRNA:   3'- -UUCGCCCCCUcGCCCc-GGUUuUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 93970 0.73 0.509357
Target:  5'- uGGGCGGGaGGGGCGGaGGCgAGgacgaggcgccccccAGACAGg -3'
miRNA:   3'- -UUCGCCC-CCUCGCC-CCGgUU---------------UUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 98235 0.73 0.486948
Target:  5'- gAGGCGGGGaGGCGGGGgCGGccACGGc -3'
miRNA:   3'- -UUCGCCCCcUCGCCCCgGUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 99950 0.67 0.803322
Target:  5'- -cGCaGGGGGGCGGcggcgccucGGCCGAGAccGCGa -3'
miRNA:   3'- uuCGcCCCCUCGCC---------CCGGUUUU--UGUc -5'
13990 3' -58.4 NC_003521.1 + 100435 0.67 0.803322
Target:  5'- gAAGCGGcggcgcucGGGAGCaGGGCCGccgaAGAAgAGu -3'
miRNA:   3'- -UUCGCC--------CCCUCGcCCCGGU----UUUUgUC- -5'
13990 3' -58.4 NC_003521.1 + 101120 0.69 0.749193
Target:  5'- -cGCGaGGGGGGCGGGucggcgggcacGCgGAAAGCGc -3'
miRNA:   3'- uuCGC-CCCCUCGCCC-----------CGgUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 103121 0.67 0.820284
Target:  5'- -cGCGGGGuGAggcugGUGGGGagagcCCAGGGGCAGc -3'
miRNA:   3'- uuCGCCCC-CU-----CGCCCC-----GGUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 103551 0.66 0.874229
Target:  5'- -uGCGuGGGGAuGaCGGGGCCcAGGucgcccgcGCAGa -3'
miRNA:   3'- uuCGC-CCCCU-C-GCCCCGGuUUU--------UGUC- -5'
13990 3' -58.4 NC_003521.1 + 103645 0.73 0.505591
Target:  5'- cAGCGGGGGcagcucGGCGGcGGCCGcu-GCGGc -3'
miRNA:   3'- uUCGCCCCC------UCGCC-CCGGUuuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 116989 0.67 0.844503
Target:  5'- gGAGCGGGGGaAGaggaGGaGGaCGAAGACGa -3'
miRNA:   3'- -UUCGCCCCC-UCg---CC-CCgGUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 120953 0.7 0.662034
Target:  5'- cGAGgGGcaGGGGGCGGGGCgGuuuGCGGu -3'
miRNA:   3'- -UUCgCC--CCCUCGCCCCGgUuuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 122674 0.66 0.885226
Target:  5'- cGGUGGGGuggcgucgccgguGAucaugggcgucucgGCGGGGCUGGAGGCGGu -3'
miRNA:   3'- uUCGCCCC-------------CU--------------CGCCCCGGUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 122765 0.66 0.867091
Target:  5'- cGGGCacGGGGA-UGGcGGCCGAGAGCAa -3'
miRNA:   3'- -UUCGc-CCCCUcGCC-CCGGUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 123537 0.66 0.874229
Target:  5'- cAGCGugaGGGGAGcCGGcaccacGGCCGAcGACGGc -3'
miRNA:   3'- uUCGC---CCCCUC-GCC------CCGGUUuUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.