miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 3' -58.4 NC_003521.1 + 668 0.67 0.820284
Target:  5'- -cGCGGaGGAGgGGGGCUAuauAACGc -3'
miRNA:   3'- uuCGCCcCCUCgCCCCGGUuu-UUGUc -5'
13990 3' -58.4 NC_003521.1 + 5658 0.73 0.477749
Target:  5'- cGGCGGaGGGuGgGGGGUCGAGAcACGGg -3'
miRNA:   3'- uUCGCC-CCCuCgCCCCGGUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 6597 0.73 0.486948
Target:  5'- aGAGUGauGGGGcGCGGGGCCAAGuAACGu -3'
miRNA:   3'- -UUCGC--CCCCuCGCCCCGGUUU-UUGUc -5'
13990 3' -58.4 NC_003521.1 + 7727 0.67 0.820284
Target:  5'- uGGGUGGGGaGGGCGGcGCgAGcgGCGGa -3'
miRNA:   3'- -UUCGCCCC-CUCGCCcCGgUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 7993 0.68 0.794619
Target:  5'- cGGCGGGGGAGguacCGGGGCa-------- -3'
miRNA:   3'- uUCGCCCCCUC----GCCCCGguuuuuguc -5'
13990 3' -58.4 NC_003521.1 + 13097 0.67 0.828528
Target:  5'- cGAG-GGGGGaAGCGGcacagaGGCCGAGAagacuACGGg -3'
miRNA:   3'- -UUCgCCCCC-UCGCC------CCGGUUUU-----UGUC- -5'
13990 3' -58.4 NC_003521.1 + 19459 0.66 0.852222
Target:  5'- -cGCGGcGGGAccaugucgcuGCGcGGCCAGGuGCAGg -3'
miRNA:   3'- uuCGCC-CCCU----------CGCcCCGGUUUuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 28057 0.69 0.701348
Target:  5'- gAGGCGGGGGAGagacaggaggGGGGaggaCGAcgGCGGg -3'
miRNA:   3'- -UUCGCCCCCUCg---------CCCCg---GUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 37392 0.71 0.59264
Target:  5'- gAGGCGGcGGGGGCGcccGGGCCuuGugcGACGGc -3'
miRNA:   3'- -UUCGCC-CCCUCGC---CCCGGuuU---UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 38230 0.7 0.652129
Target:  5'- aGGGCGGccucGGcGGGCGGGGCgGAGAcGCGGc -3'
miRNA:   3'- -UUCGCC----CC-CUCGCCCCGgUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 40895 0.68 0.771363
Target:  5'- gGGGCGGGGGucaguuuaauagcgaGGCGGGGgCGGcc-CGGg -3'
miRNA:   3'- -UUCGCCCCC---------------UCGCCCCgGUUuuuGUC- -5'
13990 3' -58.4 NC_003521.1 + 43564 0.66 0.867091
Target:  5'- gAGGCGGccgcugacugGGGGGaCGGGGgCAAA-ACGGa -3'
miRNA:   3'- -UUCGCC----------CCCUC-GCCCCgGUUUuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 46400 0.73 0.515027
Target:  5'- -uGCGuGGGGcGCGcGGGCCAgGAAGCGGc -3'
miRNA:   3'- uuCGC-CCCCuCGC-CCCGGU-UUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 47559 0.69 0.739783
Target:  5'- cGAGCGGGGaagacggcGAGCGGG-CCAcgguGGCGGu -3'
miRNA:   3'- -UUCGCCCC--------CUCGCCCcGGUuu--UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 52412 0.68 0.767712
Target:  5'- -cGCGGaggauGGGAGUGGGGuCCAucgcguGGCGGu -3'
miRNA:   3'- uuCGCC-----CCCUCGCCCC-GGUuu----UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 53360 0.66 0.867091
Target:  5'- cGGCGGcGGA--GGGGCCGAcagaccGAGCAGg -3'
miRNA:   3'- uUCGCCcCCUcgCCCCGGUU------UUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 60696 0.66 0.852222
Target:  5'- -cGCGGGGGAccCGGGGgCGGc-GCGGg -3'
miRNA:   3'- uuCGCCCCCUc-GCCCCgGUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 61253 0.66 0.881165
Target:  5'- uGAGCGucgcGGuGUGGGGCCAGugucGCAGg -3'
miRNA:   3'- -UUCGCcc--CCuCGCCCCGGUUuu--UGUC- -5'
13990 3' -58.4 NC_003521.1 + 68190 0.72 0.55343
Target:  5'- cAAGCGGGGGcGCGuGaGGaCCGAGGACGu -3'
miRNA:   3'- -UUCGCCCCCuCGC-C-CC-GGUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 69137 0.67 0.81188
Target:  5'- cGGUGGGuGGcAGCGGGGCgGuguACAu -3'
miRNA:   3'- uUCGCCC-CC-UCGCCCCGgUuuuUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.