miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 3' -58.4 NC_003521.1 + 160512 0.68 0.794619
Target:  5'- cGGCGGGaGGAGgGGGcggcaGCCuccucguacgcGGAGACAGa -3'
miRNA:   3'- uUCGCCC-CCUCgCCC-----CGG-----------UUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 101120 0.69 0.749193
Target:  5'- -cGCGaGGGGGGCGGGucggcgggcacGCgGAAAGCGc -3'
miRNA:   3'- uuCGC-CCCCUCGCCC-----------CGgUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 164826 0.68 0.766796
Target:  5'- -cGCGGGGGAGgaggaacCGGcGGCCGGcgcCAGa -3'
miRNA:   3'- uuCGCCCCCUC-------GCC-CCGGUUuuuGUC- -5'
13990 3' -58.4 NC_003521.1 + 186534 0.68 0.767712
Target:  5'- cAGCGGGGGcuccgugggaGGCaGGGCCGGcacGAACu- -3'
miRNA:   3'- uUCGCCCCC----------UCGcCCCGGUU---UUUGuc -5'
13990 3' -58.4 NC_003521.1 + 52412 0.68 0.767712
Target:  5'- -cGCGGaggauGGGAGUGGGGuCCAucgcguGGCGGu -3'
miRNA:   3'- uuCGCC-----CCCUCGCCCC-GGUuu----UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 40895 0.68 0.771363
Target:  5'- gGGGCGGGGGucaguuuaauagcgaGGCGGGGgCGGcc-CGGg -3'
miRNA:   3'- -UUCGCCCCC---------------UCGCCCCgGUUuuuGUC- -5'
13990 3' -58.4 NC_003521.1 + 150513 0.68 0.776805
Target:  5'- cGGCGGGgcccugcuaGGAGCGGGaGCCGugggguccGGCGGu -3'
miRNA:   3'- uUCGCCC---------CCUCGCCC-CGGUuu------UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 131108 0.68 0.785777
Target:  5'- cGGCGGGGcGGCGcGGcuGCCGGGAAgGGa -3'
miRNA:   3'- uUCGCCCCcUCGC-CC--CGGUUUUUgUC- -5'
13990 3' -58.4 NC_003521.1 + 71279 0.68 0.794619
Target:  5'- gAGGCGGGGGccGCGgcacGGGCCccuGGGGCAc -3'
miRNA:   3'- -UUCGCCCCCu-CGC----CCCGGu--UUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 47559 0.69 0.739783
Target:  5'- cGAGCGGGGaagacggcGAGCGGG-CCAcgguGGCGGu -3'
miRNA:   3'- -UUCGCCCC--------CUCGCCCcGGUuu--UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 209575 0.69 0.730286
Target:  5'- uGGCGGGGGucCGGGGgCGcacguAGCGGa -3'
miRNA:   3'- uUCGCCCCCucGCCCCgGUuu---UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 28057 0.69 0.701348
Target:  5'- gAGGCGGGGGAGagacaggaggGGGGaggaCGAcgGCGGg -3'
miRNA:   3'- -UUCGCCCCCUCg---------CCCCg---GUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 5658 0.73 0.477749
Target:  5'- cGGCGGaGGGuGgGGGGUCGAGAcACGGg -3'
miRNA:   3'- uUCGCC-CCCuCgCCCCGGUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 6597 0.73 0.486948
Target:  5'- aGAGUGauGGGGcGCGGGGCCAAGuAACGu -3'
miRNA:   3'- -UUCGC--CCCCuCGCCCCGGUUU-UUGUc -5'
13990 3' -58.4 NC_003521.1 + 196886 0.72 0.534106
Target:  5'- -cGCGGGuGAGgcCGGGGCgGAAGGCGGg -3'
miRNA:   3'- uuCGCCCcCUC--GCCCCGgUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 154291 0.71 0.582782
Target:  5'- gGAGCGGGGcGGCacggcguccGGGGCCGAc-GCGGg -3'
miRNA:   3'- -UUCGCCCCcUCG---------CCCCGGUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 176924 0.7 0.652129
Target:  5'- uGGGCGGGGGucGUGGGGCgGu---CAGc -3'
miRNA:   3'- -UUCGCCCCCu-CGCCCCGgUuuuuGUC- -5'
13990 3' -58.4 NC_003521.1 + 238458 0.7 0.652129
Target:  5'- aGGGCGGccucGGcGGGCGGGGCgGAGAcGCGGc -3'
miRNA:   3'- -UUCGCC----CC-CUCGCCCCGgUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 120953 0.7 0.662034
Target:  5'- cGAGgGGcaGGGGGCGGGGCgGuuuGCGGu -3'
miRNA:   3'- -UUCgCC--CCCUCGCCCCGgUuuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 202739 0.7 0.691581
Target:  5'- cGGCaGGGGcGCGGGGaCCccguguGGAACAGa -3'
miRNA:   3'- uUCGcCCCCuCGCCCC-GGu-----UUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.