miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 3' -58.4 NC_003521.1 + 236339 0.68 0.75943
Target:  5'- cGGaCGGGGGAGgacgauaaaagaucgGGGGCCGcAGGCGGu -3'
miRNA:   3'- uUC-GCCCCCUCg--------------CCCCGGUuUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 198507 1.07 0.00336
Target:  5'- aAAGCGGGGGAGCGGGGCCAAAAACAGg -3'
miRNA:   3'- -UUCGCCCCCUCGCCCCGGUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 148631 0.79 0.223211
Target:  5'- gGGGCGGGGGAGgGGaGGCC-AGGGCAu -3'
miRNA:   3'- -UUCGCCCCCUCgCC-CCGGuUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 38230 0.7 0.652129
Target:  5'- aGGGCGGccucGGcGGGCGGGGCgGAGAcGCGGc -3'
miRNA:   3'- -UUCGCC----CC-CUCGCCCCGgUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 186930 0.7 0.691581
Target:  5'- cGGUGGcGGGGGCGGcGGCgAAcgcaacucGAGCAGc -3'
miRNA:   3'- uUCGCC-CCCUCGCC-CCGgUU--------UUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 98235 0.73 0.486948
Target:  5'- gAGGCGGGGaGGCGGGGgCGGccACGGc -3'
miRNA:   3'- -UUCGCCCCcUCGCCCCgGUUuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 68190 0.72 0.55343
Target:  5'- cAAGCGGGGGcGCGuGaGGaCCGAGGACGu -3'
miRNA:   3'- -UUCGCCCCCuCGC-C-CC-GGUUUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 150019 0.71 0.622354
Target:  5'- gGGGaaGGGGGGgGGGGCUggGGAgGGg -3'
miRNA:   3'- -UUCgcCCCCUCgCCCCGGuuUUUgUC- -5'
13990 3' -58.4 NC_003521.1 + 185747 0.68 0.758505
Target:  5'- cGAGCGGGugcgccGGAGCgccuaGGGGCCGcgauGGAGCGc -3'
miRNA:   3'- -UUCGCCC------CCUCG-----CCCCGGU----UUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 99950 0.67 0.803322
Target:  5'- -cGCaGGGGGGCGGcggcgccucGGCCGAGAccGCGa -3'
miRNA:   3'- uuCGcCCCCUCGCC---------CCGGUUUU--UGUc -5'
13990 3' -58.4 NC_003521.1 + 170869 0.66 0.890523
Target:  5'- -cGCGGGGGcgGGCGcGGGUgguCAggcguccggcgucgcGAAGCAGg -3'
miRNA:   3'- uuCGCCCCC--UCGC-CCCG---GU---------------UUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 93970 0.73 0.509357
Target:  5'- uGGGCGGGaGGGGCGGaGGCgAGgacgaggcgccccccAGACAGg -3'
miRNA:   3'- -UUCGCCC-CCUCGCC-CCGgUU---------------UUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 103645 0.73 0.505591
Target:  5'- cAGCGGGGGcagcucGGCGGcGGCCGcu-GCGGc -3'
miRNA:   3'- uUCGCCCCC------UCGCC-CCGGUuuuUGUC- -5'
13990 3' -58.4 NC_003521.1 + 177905 0.69 0.71106
Target:  5'- cGAGCGGGGcGAGCGGGagggcgucGUCGGGAGgGa -3'
miRNA:   3'- -UUCGCCCC-CUCGCCC--------CGGUUUUUgUc -5'
13990 3' -58.4 NC_003521.1 + 89718 0.69 0.720709
Target:  5'- aGAGCGGGuGGaAGaCGuGGGCaCGGGGGCGGu -3'
miRNA:   3'- -UUCGCCC-CC-UC-GC-CCCG-GUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 46400 0.73 0.515027
Target:  5'- -uGCGuGGGGcGCGcGGGCCAgGAAGCGGc -3'
miRNA:   3'- uuCGC-CCCCuCGC-CCCGGU-UUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 7993 0.68 0.794619
Target:  5'- cGGCGGGGGAGguacCGGGGCa-------- -3'
miRNA:   3'- uUCGCCCCCUC----GCCCCGguuuuuguc -5'
13990 3' -58.4 NC_003521.1 + 193188 0.67 0.809328
Target:  5'- gGAGCGGcGGAGCgugaagaagcgagaGGGGCaguagcagCAAGAGCAGc -3'
miRNA:   3'- -UUCGCCcCCUCG--------------CCCCG--------GUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 37392 0.71 0.59264
Target:  5'- gAGGCGGcGGGGGCGcccGGGCCuuGugcGACGGc -3'
miRNA:   3'- -UUCGCC-CCCUCGC---CCCGGuuU---UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 156901 0.69 0.71106
Target:  5'- uGGCacGGGGGGCGacGGGCC-GGAGCGGg -3'
miRNA:   3'- uUCGc-CCCCUCGC--CCCGGuUUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.