miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 3' -58.4 NC_003521.1 + 238458 0.7 0.652129
Target:  5'- aGGGCGGccucGGcGGGCGGGGCgGAGAcGCGGc -3'
miRNA:   3'- -UUCGCC----CC-CUCGCCCCGgUUUU-UGUC- -5'
13990 3' -58.4 NC_003521.1 + 236339 0.68 0.75943
Target:  5'- cGGaCGGGGGAGgacgauaaaagaucgGGGGCCGcAGGCGGu -3'
miRNA:   3'- uUC-GCCCCCUCg--------------CCCCGGUuUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 209575 0.69 0.730286
Target:  5'- uGGCGGGGGucCGGGGgCGcacguAGCGGa -3'
miRNA:   3'- uUCGCCCCCucGCCCCgGUuu---UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 204778 0.66 0.881165
Target:  5'- cGGCGGcGGGcuuacGGCGaagaGGGCCA-AGACGGu -3'
miRNA:   3'- uUCGCC-CCC-----UCGC----CCCGGUuUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 202739 0.7 0.691581
Target:  5'- cGGCaGGGGcGCGGGGaCCccguguGGAACAGa -3'
miRNA:   3'- uUCGcCCCCuCGCCCC-GGu-----UUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 198507 1.07 0.00336
Target:  5'- aAAGCGGGGGAGCGGGGCCAAAAACAGg -3'
miRNA:   3'- -UUCGCCCCCUCGCCCCGGUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 198319 0.67 0.844503
Target:  5'- gGGGUGGGGGAugGGcGGCUAAAccuguGACGGg -3'
miRNA:   3'- -UUCGCCCCCUcgCC-CCGGUUU-----UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 196886 0.72 0.534106
Target:  5'- -cGCGGGuGAGgcCGGGGCgGAAGGCGGg -3'
miRNA:   3'- uuCGCCCcCUC--GCCCCGgUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 193270 0.66 0.874229
Target:  5'- cGGCuGcGGAGCGGGuGCC-GGGACGGg -3'
miRNA:   3'- uUCGcCcCCUCGCCC-CGGuUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 193188 0.67 0.809328
Target:  5'- gGAGCGGcGGAGCgugaagaagcgagaGGGGCaguagcagCAAGAGCAGc -3'
miRNA:   3'- -UUCGCCcCCUCG--------------CCCCG--------GUUUUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 188687 0.67 0.836603
Target:  5'- cGGGCGGGGGAuacGCGGGuCCcguGGCGc -3'
miRNA:   3'- -UUCGCCCCCU---CGCCCcGGuuuUUGUc -5'
13990 3' -58.4 NC_003521.1 + 187890 0.66 0.852222
Target:  5'- cGGGCGGcacGGGcGGCGGGGgCAGGucgaucAGCAGc -3'
miRNA:   3'- -UUCGCC---CCC-UCGCCCCgGUUU------UUGUC- -5'
13990 3' -58.4 NC_003521.1 + 186930 0.7 0.691581
Target:  5'- cGGUGGcGGGGGCGGcGGCgAAcgcaacucGAGCAGc -3'
miRNA:   3'- uUCGCC-CCCUCGCC-CCGgUU--------UUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 186789 0.66 0.887891
Target:  5'- uGGUGGcGGcGGCGGGGgCAAGAagcACGGc -3'
miRNA:   3'- uUCGCC-CCcUCGCCCCgGUUUU---UGUC- -5'
13990 3' -58.4 NC_003521.1 + 186534 0.68 0.767712
Target:  5'- cAGCGGGGGcuccgugggaGGCaGGGCCGGcacGAACu- -3'
miRNA:   3'- uUCGCCCCC----------UCGcCCCGGUU---UUUGuc -5'
13990 3' -58.4 NC_003521.1 + 185747 0.68 0.758505
Target:  5'- cGAGCGGGugcgccGGAGCgccuaGGGGCCGcgauGGAGCGc -3'
miRNA:   3'- -UUCGCCC------CCUCG-----CCCCGGU----UUUUGUc -5'
13990 3' -58.4 NC_003521.1 + 177905 0.69 0.71106
Target:  5'- cGAGCGGGGcGAGCGGGagggcgucGUCGGGAGgGa -3'
miRNA:   3'- -UUCGCCCC-CUCGCCC--------CGGUUUUUgUc -5'
13990 3' -58.4 NC_003521.1 + 176924 0.7 0.652129
Target:  5'- uGGGCGGGGGucGUGGGGCgGu---CAGc -3'
miRNA:   3'- -UUCGCCCCCu-CGCCCCGgUuuuuGUC- -5'
13990 3' -58.4 NC_003521.1 + 172455 0.66 0.874229
Target:  5'- gGAGaGGGGaGGCaGGGCCGGcAGCGGu -3'
miRNA:   3'- -UUCgCCCCcUCGcCCCGGUUuUUGUC- -5'
13990 3' -58.4 NC_003521.1 + 170869 0.66 0.890523
Target:  5'- -cGCGGGGGcgGGCGcGGGUgguCAggcguccggcgucgcGAAGCAGg -3'
miRNA:   3'- uuCGCCCCC--UCGC-CCCG---GU---------------UUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.