Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13992 | 3' | -62.3 | NC_003521.1 | + | 196740 | 1.07 | 0.001714 |
Target: 5'- gCUGGGCCACCGGCUUGACCCGCAGGUa -3' miRNA: 3'- -GACCCGGUGGCCGAACUGGGCGUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 174057 | 0.79 | 0.15146 |
Target: 5'- uCUGGGCCGgCGGCaucACCCGCGGGa -3' miRNA: 3'- -GACCCGGUgGCCGaacUGGGCGUCCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 38632 | 0.74 | 0.2825 |
Target: 5'- -aGaGGCgCGCCGGCUgggUGuCCCGCGGGUc -3' miRNA: 3'- gaC-CCG-GUGGCCGA---ACuGGGCGUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 238859 | 0.74 | 0.2825 |
Target: 5'- -aGaGGCgCGCCGGCUgggUGuCCCGCGGGUc -3' miRNA: 3'- gaC-CCG-GUGGCCGA---ACuGGGCGUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 129824 | 0.74 | 0.2825 |
Target: 5'- gCUGGGCCGCCuGCUgcuggGGCCCGUGGc- -3' miRNA: 3'- -GACCCGGUGGcCGAa----CUGGGCGUCca -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 37473 | 0.74 | 0.288762 |
Target: 5'- -cGGGCCACCGug--GugCCGCAGGg -3' miRNA: 3'- gaCCCGGUGGCcgaaCugGGCGUCCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 95917 | 0.73 | 0.32171 |
Target: 5'- cCUcGGCCACCGGCaugccgugGGCCCGCAGc- -3' miRNA: 3'- -GAcCCGGUGGCCGaa------CUGGGCGUCca -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 36695 | 0.73 | 0.328628 |
Target: 5'- -cGGGCU-CCGGCgccUGGCCCgaGCAGGUg -3' miRNA: 3'- gaCCCGGuGGCCGa--ACUGGG--CGUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 55247 | 0.73 | 0.350036 |
Target: 5'- -aGcGGCuCGCCGGCga-GCCCGCGGGg -3' miRNA: 3'- gaC-CCG-GUGGCCGaacUGGGCGUCCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 102370 | 0.72 | 0.38787 |
Target: 5'- gUGGcGCCGCCGGCgaUGcACgCGCGGGg -3' miRNA: 3'- gACC-CGGUGGCCGa-AC-UGgGCGUCCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 92395 | 0.72 | 0.38787 |
Target: 5'- cCUGGaGCCGCCGGCgcgGccGCCCGCAccauGGc -3' miRNA: 3'- -GACC-CGGUGGCCGaa-C--UGGGCGU----CCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 223464 | 0.72 | 0.403739 |
Target: 5'- uCUGGGCCgccgcGCCGGCgucacGGCCCgGgAGGUg -3' miRNA: 3'- -GACCCGG-----UGGCCGaa---CUGGG-CgUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 148452 | 0.71 | 0.435833 |
Target: 5'- -gGGGUgGCCGGUgcgUGcugaugacgaaaaGCCCGCGGGUc -3' miRNA: 3'- gaCCCGgUGGCCGa--AC-------------UGGGCGUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 62831 | 0.71 | 0.436675 |
Target: 5'- aUGGGCaugGCCcGCUcucUGACCCGgCAGGUg -3' miRNA: 3'- gACCCGg--UGGcCGA---ACUGGGC-GUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 212495 | 0.71 | 0.436675 |
Target: 5'- --cGGCCACCGGCgg--UCCGCAGGc -3' miRNA: 3'- gacCCGGUGGCCGaacuGGGCGUCCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 89170 | 0.71 | 0.462365 |
Target: 5'- gCUGGGCCGUgGGCcUGGCCCuGCuGGa -3' miRNA: 3'- -GACCCGGUGgCCGaACUGGG-CGuCCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 127490 | 0.7 | 0.479926 |
Target: 5'- cCUGGaaGCCccCCGGCgucuUGGCCCaGCAGGUc -3' miRNA: 3'- -GACC--CGGu-GGCCGa---ACUGGG-CGUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 113852 | 0.7 | 0.497807 |
Target: 5'- -gGGGCgGCCGGCgacGACggCGCGGGUu -3' miRNA: 3'- gaCCCGgUGGCCGaa-CUGg-GCGUCCA- -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 127840 | 0.7 | 0.506859 |
Target: 5'- -aGGGCC-CCGGCgccaGCCCGuCGGGc -3' miRNA: 3'- gaCCCGGuGGCCGaac-UGGGC-GUCCa -5' |
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13992 | 3' | -62.3 | NC_003521.1 | + | 152157 | 0.7 | 0.51598 |
Target: 5'- -cGGGCCGCCGGCccaccGACCUgGCGGc- -3' miRNA: 3'- gaCCCGGUGGCCGaa---CUGGG-CGUCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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