miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 3' -62.3 NC_003521.1 + 119594 0.68 0.638791
Target:  5'- gCUGGGCgGCgGGUgcagcgucucGugCUGCAGGUg -3'
miRNA:   3'- -GACCCGgUGgCCGaa--------CugGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 29450 0.69 0.570037
Target:  5'- gUGGGCCaguucaugauccgcgACCGGCUgcugcggGaccccaaccacucgcGCCCGCGGGa -3'
miRNA:   3'- gACCCGG---------------UGGCCGAa------C---------------UGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 30813 0.69 0.581414
Target:  5'- -aGGGcCCGCCGGCgaaACCCGCGa-- -3'
miRNA:   3'- gaCCC-GGUGGCCGaacUGGGCGUcca -5'
13992 3' -62.3 NC_003521.1 + 118717 0.69 0.581414
Target:  5'- aUGGGCgaggggcgcggCACCGGCacGGgCUGCAGGUu -3'
miRNA:   3'- gACCCG-----------GUGGCCGaaCUgGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 76053 0.68 0.588073
Target:  5'- -cGGGCCGCCagacgcuugaugacGGCgaUGugCgGCAGGUu -3'
miRNA:   3'- gaCCCGGUGG--------------CCGa-ACugGgCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 60686 0.68 0.590931
Target:  5'- gCUGcGGCCGCgCGGgg-GACCCGgGGGc -3'
miRNA:   3'- -GAC-CCGGUG-GCCgaaCUGGGCgUCCa -5'
13992 3' -62.3 NC_003521.1 + 200314 0.68 0.594745
Target:  5'- -cGGGCCgGCCGGUcggacguguuucgGGCCgGCGGGUc -3'
miRNA:   3'- gaCCCGG-UGGCCGaa-----------CUGGgCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 120592 0.68 0.619616
Target:  5'- -cGcGGCCGCCGGCU---CCUGCcGGUa -3'
miRNA:   3'- gaC-CCGGUGGCCGAacuGGGCGuCCA- -5'
13992 3' -62.3 NC_003521.1 + 128137 0.68 0.637832
Target:  5'- -aGGGCgGCCcgcgcucGGCgaaGGCCUGCAGGc -3'
miRNA:   3'- gaCCCGgUGG-------CCGaa-CUGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 220226 0.69 0.562482
Target:  5'- --uGGCCGCCgucaGGCUguUGGCCaGCAGGUa -3'
miRNA:   3'- gacCCGGUGG----CCGA--ACUGGgCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 221346 0.69 0.553077
Target:  5'- -cGGGCCACCuGCaccUGGCCgCGCAGcGa -3'
miRNA:   3'- gaCCCGGUGGcCGa--ACUGG-GCGUC-Ca -5'
13992 3' -62.3 NC_003521.1 + 121893 0.69 0.547457
Target:  5'- aUGGGCUcCUGGCUggggcagauggcccGGCCCGUGGGg -3'
miRNA:   3'- gACCCGGuGGCCGAa-------------CUGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 129824 0.74 0.2825
Target:  5'- gCUGGGCCGCCuGCUgcuggGGCCCGUGGc- -3'
miRNA:   3'- -GACCCGGUGGcCGAa----CUGGGCGUCca -5'
13992 3' -62.3 NC_003521.1 + 37473 0.74 0.288762
Target:  5'- -cGGGCCACCGug--GugCCGCAGGg -3'
miRNA:   3'- gaCCCGGUGGCcgaaCugGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 55247 0.73 0.350036
Target:  5'- -aGcGGCuCGCCGGCga-GCCCGCGGGg -3'
miRNA:   3'- gaC-CCG-GUGGCCGaacUGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 223464 0.72 0.403739
Target:  5'- uCUGGGCCgccgcGCCGGCgucacGGCCCgGgAGGUg -3'
miRNA:   3'- -GACCCGG-----UGGCCGaa---CUGGG-CgUCCA- -5'
13992 3' -62.3 NC_003521.1 + 148452 0.71 0.435833
Target:  5'- -gGGGUgGCCGGUgcgUGcugaugacgaaaaGCCCGCGGGUc -3'
miRNA:   3'- gaCCCGgUGGCCGa--AC-------------UGGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 127840 0.7 0.506859
Target:  5'- -aGGGCC-CCGGCgccaGCCCGuCGGGc -3'
miRNA:   3'- gaCCCGGuGGCCGaac-UGGGC-GUCCa -5'
13992 3' -62.3 NC_003521.1 + 89981 0.69 0.54372
Target:  5'- -gGGGUUcaACCGGCgggUGGCgCUGCGGGg -3'
miRNA:   3'- gaCCCGG--UGGCCGa--ACUG-GGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 200068 0.69 0.54372
Target:  5'- gCUGGcuuaCCGCCGGCUUGGCCuCGcCAGc- -3'
miRNA:   3'- -GACCc---GGUGGCCGAACUGG-GC-GUCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.