Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 120722 | 0.73 | 0.798609 |
Target: 5'- uGGccCUGGAccguGG-CCACCAGGGGCaCCa -3' miRNA: 3'- -CCuaGACCU----UCaGGUGGUCCCUGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 126664 | 0.66 | 0.988514 |
Target: 5'- cGGGUCcgaguagaagcggUGGAAGggcaCCGCCAGGcaguACUCg -3' miRNA: 3'- -CCUAG-------------ACCUUCa---GGUGGUCCc---UGAGg -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 130096 | 0.66 | 0.988652 |
Target: 5'- cGcgCUGGuc-UCCACCcGGGACcugCCg -3' miRNA: 3'- cCuaGACCuucAGGUGGuCCCUGa--GG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 135694 | 0.68 | 0.953437 |
Target: 5'- gGGAcCUcGGggGUCUGCCucAGGaGGCUCa -3' miRNA: 3'- -CCUaGA-CCuuCAGGUGG--UCC-CUGAGg -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 144128 | 0.67 | 0.972875 |
Target: 5'- cGGcCUGGAcgaGGUgCGCCuGGG-CUCCg -3' miRNA: 3'- cCUaGACCU---UCAgGUGGuCCCuGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 148119 | 0.66 | 0.988652 |
Target: 5'- uGGAUcCUGGGAccucaucguGUC--CCAGGGAC-CCg -3' miRNA: 3'- -CCUA-GACCUU---------CAGguGGUCCCUGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 148764 | 0.66 | 0.985634 |
Target: 5'- uGGAUCUGGGugcccucggcGGUCgCGCCGaGGAg-CCg -3' miRNA: 3'- -CCUAGACCU----------UCAG-GUGGUcCCUgaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 149440 | 0.71 | 0.863252 |
Target: 5'- uGGGUC-GGggGUCCGggcCCGGGGuucggccccCUCCc -3' miRNA: 3'- -CCUAGaCCuuCAGGU---GGUCCCu--------GAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 150205 | 0.66 | 0.988652 |
Target: 5'- cGGGccuUCUGGcAGGUCCACagccugcuGGGcuacauCUCCg -3' miRNA: 3'- -CCU---AGACC-UUCAGGUGgu------CCCu-----GAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 150696 | 0.66 | 0.982037 |
Target: 5'- cGGG-CUGGGA-UCCGCCcacuaGGGGGCguaCCu -3' miRNA: 3'- -CCUaGACCUUcAGGUGG-----UCCCUGa--GG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 151601 | 0.69 | 0.940865 |
Target: 5'- cGcgCUGGAGGUCgGCC--GGugUCCc -3' miRNA: 3'- cCuaGACCUUCAGgUGGucCCugAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 152301 | 0.66 | 0.988652 |
Target: 5'- -----cGGA---UCAUCAGGGACUCCa -3' miRNA: 3'- ccuagaCCUucaGGUGGUCCCUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 157591 | 0.67 | 0.97543 |
Target: 5'- cGAUCUGGucAAGUgCGCCGaGGGCaCCg -3' miRNA: 3'- cCUAGACC--UUCAgGUGGUcCCUGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 167113 | 0.67 | 0.970135 |
Target: 5'- gGGA-CUGaGGAGccUCC-CUGGGGACUUCg -3' miRNA: 3'- -CCUaGAC-CUUC--AGGuGGUCCCUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 172207 | 0.67 | 0.970135 |
Target: 5'- gGGcgCccaGGAAGUCCACgGGGGugGCaCCg -3' miRNA: 3'- -CCuaGa--CCUUCAGGUGgUCCC--UGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 172764 | 0.73 | 0.762642 |
Target: 5'- cGGcauUCUGGcuG-CCACCGGGGGCgCCg -3' miRNA: 3'- -CCu--AGACCuuCaGGUGGUCCCUGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 176729 | 0.68 | 0.967201 |
Target: 5'- --uUCUGGAAGcCCGCCuccaggccGGGCUCg -3' miRNA: 3'- ccuAGACCUUCaGGUGGuc------CCUGAGg -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 176855 | 0.68 | 0.953437 |
Target: 5'- aGGAUCUGGuuauGGcgCCgcGCCAGcaGCUCCa -3' miRNA: 3'- -CCUAGACCu---UCa-GG--UGGUCccUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 181160 | 0.78 | 0.551505 |
Target: 5'- uGGGUCUccgucuccagauagaGGGcgaagcgcacgaAGUCCACCcGGGGCUCCa -3' miRNA: 3'- -CCUAGA---------------CCU------------UCAGGUGGuCCCUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 186514 | 0.79 | 0.490542 |
Target: 5'- gGGAUCUcGGgcGgugucgCCAgCGGGGGCUCCg -3' miRNA: 3'- -CCUAGA-CCuuCa-----GGUgGUCCCUGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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