miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 5' -54.2 NC_003521.1 + 4548 0.68 0.957192
Target:  5'- aGGGUCcccgGGGAGUCacuacgGCCGGGGcACacgCCg -3'
miRNA:   3'- -CCUAGa---CCUUCAGg-----UGGUCCC-UGa--GG- -5'
13992 5' -54.2 NC_003521.1 + 12961 0.7 0.909673
Target:  5'- -cGUCgGGAccucauaaucccAGUCUggugaGCCAGGGACUCUg -3'
miRNA:   3'- ccUAGaCCU------------UCAGG-----UGGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 13547 0.67 0.975182
Target:  5'- uGAcCUGGGAGgucgucaUCCACUuGGGAauCUCCg -3'
miRNA:   3'- cCUaGACCUUC-------AGGUGGuCCCU--GAGG- -5'
13992 5' -54.2 NC_003521.1 + 22261 0.66 0.983912
Target:  5'- aGGAUgCUGGucggGGUCUACCAcGGcCUCg -3'
miRNA:   3'- -CCUA-GACCu---UCAGGUGGUcCCuGAGg -5'
13992 5' -54.2 NC_003521.1 + 23972 0.7 0.903688
Target:  5'- cGGGcCUGGAAcagucGUCCGCCGcGGGCUgCg -3'
miRNA:   3'- -CCUaGACCUU-----CAGGUGGUcCCUGAgG- -5'
13992 5' -54.2 NC_003521.1 + 33829 0.66 0.988652
Target:  5'- -cGUCUGcGAAGgacCCGCCuGGGGCgUCa -3'
miRNA:   3'- ccUAGAC-CUUCa--GGUGGuCCCUG-AGg -5'
13992 5' -54.2 NC_003521.1 + 39927 0.67 0.970135
Target:  5'- aGAUgUGGAuGUCCuccGCCAGcaGCUCCa -3'
miRNA:   3'- cCUAgACCUuCAGG---UGGUCccUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 56024 0.68 0.960735
Target:  5'- -aGUC-GGAGGcggCCACCAGGGcgUCCa -3'
miRNA:   3'- ccUAGaCCUUCa--GGUGGUCCCugAGG- -5'
13992 5' -54.2 NC_003521.1 + 71949 0.68 0.967201
Target:  5'- --uUCgc-AAGUCCGCCAGGGACg-- -3'
miRNA:   3'- ccuAGaccUUCAGGUGGUCCCUGagg -5'
13992 5' -54.2 NC_003521.1 + 72144 0.69 0.945276
Target:  5'- -----aGGAcGgccugCCACCAGGGACcUCCg -3'
miRNA:   3'- ccuagaCCUuCa----GGUGGUCCCUG-AGG- -5'
13992 5' -54.2 NC_003521.1 + 73700 0.69 0.945276
Target:  5'- --cUCUaaGcGAAGUCC-CCAGGGagGCUCCu -3'
miRNA:   3'- ccuAGA--C-CUUCAGGuGGUCCC--UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 78890 0.66 0.986597
Target:  5'- -cGUCaGGggGUCCACgcgggccucguagaCGGGGaagccgcGCUCCa -3'
miRNA:   3'- ccUAGaCCuuCAGGUG--------------GUCCC-------UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 86333 0.68 0.966897
Target:  5'- uGGAUgCUGGAGGUCUugccggcGCCGGcGGug-CCg -3'
miRNA:   3'- -CCUA-GACCUUCAGG-------UGGUC-CCugaGG- -5'
13992 5' -54.2 NC_003521.1 + 91065 0.68 0.960735
Target:  5'- uGGAUCUcGGuuGUCCGgacaacgcaaCAGGGGC-CCg -3'
miRNA:   3'- -CCUAGA-CCuuCAGGUg---------GUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 92038 0.8 0.402254
Target:  5'- uGGGUCcGGggGUCC-CCGGGGugcCUCCc -3'
miRNA:   3'- -CCUAGaCCuuCAGGuGGUCCCu--GAGG- -5'
13992 5' -54.2 NC_003521.1 + 100117 0.66 0.982037
Target:  5'- aGGAUgcgaccccgcggCUGGcGGUCCugCGggaaggccguGGGGCUCUu -3'
miRNA:   3'- -CCUA------------GACCuUCAGGugGU----------CCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 100846 0.66 0.987211
Target:  5'- aGGGUCggUGaGAGGcUCCgGCCGGGacuGCUCCa -3'
miRNA:   3'- -CCUAG--AC-CUUC-AGG-UGGUCCc--UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 103610 0.66 0.981841
Target:  5'- gGGAUCUgaaagaaGGgcGUCCcgGCCGccGACUCCa -3'
miRNA:   3'- -CCUAGA-------CCuuCAGG--UGGUccCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 108615 0.68 0.953437
Target:  5'- aGGAUCuUGGGcacguuGUUgGCCAGGcGGCUgCCg -3'
miRNA:   3'- -CCUAG-ACCUu-----CAGgUGGUCC-CUGA-GG- -5'
13992 5' -54.2 NC_003521.1 + 109474 0.68 0.967201
Target:  5'- -cGUCUGGGAacaugCgCGCCAGGcGCUCCa -3'
miRNA:   3'- ccUAGACCUUca---G-GUGGUCCcUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.