miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 5' -54.2 NC_003521.1 + 100846 0.66 0.987211
Target:  5'- aGGGUCggUGaGAGGcUCCgGCCGGGacuGCUCCa -3'
miRNA:   3'- -CCUAG--AC-CUUC-AGG-UGGUCCc--UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 39927 0.67 0.970135
Target:  5'- aGAUgUGGAuGUCCuccGCCAGcaGCUCCa -3'
miRNA:   3'- cCUAgACCUuCAGG---UGGUCccUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 172207 0.67 0.970135
Target:  5'- gGGcgCccaGGAAGUCCACgGGGGugGCaCCg -3'
miRNA:   3'- -CCuaGa--CCUUCAGGUGgUCCC--UGaGG- -5'
13992 5' -54.2 NC_003521.1 + 144128 0.67 0.972875
Target:  5'- cGGcCUGGAcgaGGUgCGCCuGGG-CUCCg -3'
miRNA:   3'- cCUaGACCU---UCAgGUGGuCCCuGAGG- -5'
13992 5' -54.2 NC_003521.1 + 205200 0.67 0.972875
Target:  5'- aGGGUCcGGAGGcCCGuCCAGGGcCg-- -3'
miRNA:   3'- -CCUAGaCCUUCaGGU-GGUCCCuGagg -5'
13992 5' -54.2 NC_003521.1 + 100117 0.66 0.982037
Target:  5'- aGGAUgcgaccccgcggCUGGcGGUCCugCGggaaggccguGGGGCUCUu -3'
miRNA:   3'- -CCUA------------GACCuUCAGGugGU----------CCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 235138 0.66 0.982037
Target:  5'- gGGA--UGGugaucgCCACCAcGGACUCCg -3'
miRNA:   3'- -CCUagACCuuca--GGUGGUcCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 148764 0.66 0.985634
Target:  5'- uGGAUCUGGGugcccucggcGGUCgCGCCGaGGAg-CCg -3'
miRNA:   3'- -CCUAGACCU----------UCAG-GUGGUcCCUgaGG- -5'
13992 5' -54.2 NC_003521.1 + 78890 0.66 0.986597
Target:  5'- -cGUCaGGggGUCCACgcgggccucguagaCGGGGaagccgcGCUCCa -3'
miRNA:   3'- ccUAGaCCuuCAGGUG--------------GUCCC-------UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 235352 0.67 0.970135
Target:  5'- gGGA-CUGGAAGUCgcacgcgcucuuCACCAucuGGGACgggauggagUCCg -3'
miRNA:   3'- -CCUaGACCUUCAG------------GUGGU---CCCUG---------AGG- -5'
13992 5' -54.2 NC_003521.1 + 167113 0.67 0.970135
Target:  5'- gGGA-CUGaGGAGccUCC-CUGGGGACUUCg -3'
miRNA:   3'- -CCUaGAC-CUUC--AGGuGGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 109474 0.68 0.967201
Target:  5'- -cGUCUGGGAacaugCgCGCCAGGcGCUCCa -3'
miRNA:   3'- ccUAGACCUUca---G-GUGGUCCcUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 186514 0.79 0.490542
Target:  5'- gGGAUCUcGGgcGgugucgCCAgCGGGGGCUCCg -3'
miRNA:   3'- -CCUAGA-CCuuCa-----GGUgGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 181160 0.78 0.551505
Target:  5'- uGGGUCUccgucuccagauagaGGGcgaagcgcacgaAGUCCACCcGGGGCUCCa -3'
miRNA:   3'- -CCUAGA---------------CCU------------UCAGGUGGuCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 172764 0.73 0.762642
Target:  5'- cGGcauUCUGGcuG-CCACCGGGGGCgCCg -3'
miRNA:   3'- -CCu--AGACCuuCaGGUGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 120722 0.73 0.798609
Target:  5'- uGGccCUGGAccguGG-CCACCAGGGGCaCCa -3'
miRNA:   3'- -CCuaGACCU----UCaGGUGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 4548 0.68 0.957192
Target:  5'- aGGGUCcccgGGGAGUCacuacgGCCGGGGcACacgCCg -3'
miRNA:   3'- -CCUAGa---CCUUCAGg-----UGGUCCC-UGa--GG- -5'
13992 5' -54.2 NC_003521.1 + 56024 0.68 0.960735
Target:  5'- -aGUC-GGAGGcggCCACCAGGGcgUCCa -3'
miRNA:   3'- ccUAGaCCUUCa--GGUGGUCCCugAGG- -5'
13992 5' -54.2 NC_003521.1 + 91065 0.68 0.960735
Target:  5'- uGGAUCUcGGuuGUCCGgacaacgcaaCAGGGGC-CCg -3'
miRNA:   3'- -CCUAGA-CCuuCAGGUg---------GUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 216383 0.68 0.967201
Target:  5'- aGGGcugcCUcGGgcGUCCAC--GGGACUCCg -3'
miRNA:   3'- -CCUa---GA-CCuuCAGGUGguCCCUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.