miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 5' -54.2 NC_003521.1 + 196775 1.15 0.003096
Target:  5'- cGGAUCUGGAAGUCCACCAGGGACUCCa -3'
miRNA:   3'- -CCUAGACCUUCAGGUGGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 92038 0.8 0.402254
Target:  5'- uGGGUCcGGggGUCC-CCGGGGugcCUCCc -3'
miRNA:   3'- -CCUAGaCCuuCAGGuGGUCCCu--GAGG- -5'
13992 5' -54.2 NC_003521.1 + 186514 0.79 0.490542
Target:  5'- gGGAUCUcGGgcGgugucgCCAgCGGGGGCUCCg -3'
miRNA:   3'- -CCUAGA-CCuuCa-----GGUgGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 181160 0.78 0.551505
Target:  5'- uGGGUCUccgucuccagauagaGGGcgaagcgcacgaAGUCCACCcGGGGCUCCa -3'
miRNA:   3'- -CCUAGA---------------CCU------------UCAGGUGGuCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 172764 0.73 0.762642
Target:  5'- cGGcauUCUGGcuG-CCACCGGGGGCgCCg -3'
miRNA:   3'- -CCu--AGACCuuCaGGUGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 120722 0.73 0.798609
Target:  5'- uGGccCUGGAccguGG-CCACCAGGGGCaCCa -3'
miRNA:   3'- -CCuaGACCU----UCaGGUGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 215438 0.72 0.82412
Target:  5'- cGGGUCUGGGAG-----CAGGGugUCCg -3'
miRNA:   3'- -CCUAGACCUUCaggugGUCCCugAGG- -5'
13992 5' -54.2 NC_003521.1 + 149440 0.71 0.863252
Target:  5'- uGGGUC-GGggGUCCGggcCCGGGGuucggccccCUCCc -3'
miRNA:   3'- -CCUAGaCCuuCAGGU---GGUCCCu--------GAGG- -5'
13992 5' -54.2 NC_003521.1 + 198284 0.71 0.884418
Target:  5'- gGGcGUCgcGGAGGaCCGCUgGGGGGCUCCg -3'
miRNA:   3'- -CC-UAGa-CCUUCaGGUGG-UCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 23972 0.7 0.903688
Target:  5'- cGGGcCUGGAAcagucGUCCGCCGcGGGCUgCg -3'
miRNA:   3'- -CCUaGACCUU-----CAGGUGGUcCCUGAgG- -5'
13992 5' -54.2 NC_003521.1 + 12961 0.7 0.909673
Target:  5'- -cGUCgGGAccucauaaucccAGUCUggugaGCCAGGGACUCUg -3'
miRNA:   3'- ccUAGaCCU------------UCAGG-----UGGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 207807 0.69 0.924186
Target:  5'- cGGcgCUGGucaagcuggccgaGAGccugcggggcuucaUCCGCCAGGG-CUCCu -3'
miRNA:   3'- -CCuaGACC-------------UUC--------------AGGUGGUCCCuGAGG- -5'
13992 5' -54.2 NC_003521.1 + 151601 0.69 0.940865
Target:  5'- cGcgCUGGAGGUCgGCC--GGugUCCc -3'
miRNA:   3'- cCuaGACCUUCAGgUGGucCCugAGG- -5'
13992 5' -54.2 NC_003521.1 + 72144 0.69 0.945276
Target:  5'- -----aGGAcGgccugCCACCAGGGACcUCCg -3'
miRNA:   3'- ccuagaCCUuCa----GGUGGUCCCUG-AGG- -5'
13992 5' -54.2 NC_003521.1 + 204243 0.69 0.945276
Target:  5'- aGGggCUGGAGGaUCAC--GGGACUCUc -3'
miRNA:   3'- -CCuaGACCUUCaGGUGguCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 73700 0.69 0.945276
Target:  5'- --cUCUaaGcGAAGUCC-CCAGGGagGCUCCu -3'
miRNA:   3'- ccuAGA--C-CUUCAGGuGGUCCC--UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 176855 0.68 0.953437
Target:  5'- aGGAUCUGGuuauGGcgCCgcGCCAGcaGCUCCa -3'
miRNA:   3'- -CCUAGACCu---UCa-GG--UGGUCccUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 108615 0.68 0.953437
Target:  5'- aGGAUCuUGGGcacguuGUUgGCCAGGcGGCUgCCg -3'
miRNA:   3'- -CCUAG-ACCUu-----CAGgUGGUCC-CUGA-GG- -5'
13992 5' -54.2 NC_003521.1 + 135694 0.68 0.953437
Target:  5'- gGGAcCUcGGggGUCUGCCucAGGaGGCUCa -3'
miRNA:   3'- -CCUaGA-CCuuCAGGUGG--UCC-CUGAGg -5'
13992 5' -54.2 NC_003521.1 + 4548 0.68 0.957192
Target:  5'- aGGGUCcccgGGGAGUCacuacgGCCGGGGcACacgCCg -3'
miRNA:   3'- -CCUAGa---CCUUCAGg-----UGGUCCC-UGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.