miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 28381 0.73 0.555237
Target:  5'- -uGGCgugGCAcGUGUCGCGaCGCcUGGCCa -3'
miRNA:   3'- cgUCGa--CGUcCACAGCGC-GCG-ACUGG- -5'
13993 5' -58 NC_003521.1 + 28481 0.66 0.916695
Target:  5'- cCAGCgGguGGUGaUGgGCG-UGACCg -3'
miRNA:   3'- cGUCGaCguCCACaGCgCGCgACUGG- -5'
13993 5' -58 NC_003521.1 + 29149 0.74 0.480276
Target:  5'- cCAGCUGCAGaccGUGUC-CGaGCUGGCCu -3'
miRNA:   3'- cGUCGACGUC---CACAGcGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 29475 0.67 0.871367
Target:  5'- gGCuGCUGCGGGaccccaaccacUCGCGCccGCggGACCg -3'
miRNA:   3'- -CGuCGACGUCCac---------AGCGCG--CGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 30239 0.77 0.339438
Target:  5'- cGC-GCUGCAGGUccgcgcgguugccGUgGCGCaGCUGACCc -3'
miRNA:   3'- -CGuCGACGUCCA-------------CAgCGCG-CGACUGG- -5'
13993 5' -58 NC_003521.1 + 30578 0.67 0.858381
Target:  5'- gGUAGg-GCAGGUccaagugccGUC-CGCGCUGACg -3'
miRNA:   3'- -CGUCgaCGUCCA---------CAGcGCGCGACUGg -5'
13993 5' -58 NC_003521.1 + 30709 0.71 0.662653
Target:  5'- cGCGGCgccGCGGGcucaUGUCGCGUGaccuccGACCu -3'
miRNA:   3'- -CGUCGa--CGUCC----ACAGCGCGCga----CUGG- -5'
13993 5' -58 NC_003521.1 + 31085 0.66 0.916695
Target:  5'- cCGGCUGCcguGGcUGcCGCuGCGCacGACCu -3'
miRNA:   3'- cGUCGACGu--CC-ACaGCG-CGCGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 31705 0.72 0.584281
Target:  5'- gGCGGCgGCAGcauGUG-CGCGUGCUGggacGCCg -3'
miRNA:   3'- -CGUCGaCGUC---CACaGCGCGCGAC----UGG- -5'
13993 5' -58 NC_003521.1 + 32011 0.66 0.91106
Target:  5'- aCAGCUGCcgcagguaauuGGUG-CGCGUGCcgaagGACUu -3'
miRNA:   3'- cGUCGACGu----------CCACaGCGCGCGa----CUGG- -5'
13993 5' -58 NC_003521.1 + 32116 0.67 0.879672
Target:  5'- cGCGGCUgaucucggGCAGGUagCGgGCGCgGugCa -3'
miRNA:   3'- -CGUCGA--------CGUCCAcaGCgCGCGaCugG- -5'
13993 5' -58 NC_003521.1 + 33457 0.68 0.810888
Target:  5'- cGC-GCUGUucucGGUGUCGgccggcCGCGCcGACCc -3'
miRNA:   3'- -CGuCGACGu---CCACAGC------GCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 34451 0.68 0.819217
Target:  5'- gGC-GCUGCGGGccuggggGUCGuCGCcGCaGGCCa -3'
miRNA:   3'- -CGuCGACGUCCa------CAGC-GCG-CGaCUGG- -5'
13993 5' -58 NC_003521.1 + 34503 0.66 0.899141
Target:  5'- aGCAGCgagcGCAGGUa--GCGgcCGCgGGCCg -3'
miRNA:   3'- -CGUCGa---CGUCCAcagCGC--GCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 34592 0.7 0.748833
Target:  5'- -gGGCUGCAGG---CGCGCGCagaugGACUc -3'
miRNA:   3'- cgUCGACGUCCacaGCGCGCGa----CUGG- -5'
13993 5' -58 NC_003521.1 + 35144 0.66 0.916695
Target:  5'- -gAGC-GCGGGUG-CGCcacGCGCccgGGCCu -3'
miRNA:   3'- cgUCGaCGUCCACaGCG---CGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 35751 0.72 0.62342
Target:  5'- gGUAGggGCAGuGUGUCGgGCaacCUGACCa -3'
miRNA:   3'- -CGUCgaCGUC-CACAGCgCGc--GACUGG- -5'
13993 5' -58 NC_003521.1 + 36775 0.67 0.850901
Target:  5'- uGCGGCgacugGCAGG-GcCaCGCGCUGcggaGCCg -3'
miRNA:   3'- -CGUCGa----CGUCCaCaGcGCGCGAC----UGG- -5'
13993 5' -58 NC_003521.1 + 37456 0.73 0.555237
Target:  5'- --cGCUGUGGGc-UCGCGCGCgGGCCa -3'
miRNA:   3'- cguCGACGUCCacAGCGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 38998 0.66 0.89286
Target:  5'- gGC-GCUGguGGaUGUgGCGCuGCacGGCCg -3'
miRNA:   3'- -CGuCGACguCC-ACAgCGCG-CGa-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.