miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 366 0.68 0.835399
Target:  5'- gGCGGCgUGCuguggaacgaAGGUGagUGUGUGCUGGCg -3'
miRNA:   3'- -CGUCG-ACG----------UCCACa-GCGCGCGACUGg -5'
13993 5' -58 NC_003521.1 + 1619 0.7 0.699593
Target:  5'- cGCcuguGCUGCGGGUGgcuguuucugggCGuCGUGCUGcCCa -3'
miRNA:   3'- -CGu---CGACGUCCACa-----------GC-GCGCGACuGG- -5'
13993 5' -58 NC_003521.1 + 11099 0.7 0.711123
Target:  5'- uGCGGCUGguGGUGUUguuggacaugGUGCGCUa--- -3'
miRNA:   3'- -CGUCGACguCCACAG----------CGCGCGAcugg -5'
13993 5' -58 NC_003521.1 + 14478 0.68 0.843238
Target:  5'- cGCGGCgcuacccGCGGGg--CGCGCGC--ACCa -3'
miRNA:   3'- -CGUCGa------CGUCCacaGCGCGCGacUGG- -5'
13993 5' -58 NC_003521.1 + 14640 0.76 0.394178
Target:  5'- aGCAGCUGCAGuGcGUCuggcccuucuGCGCGCUGAa- -3'
miRNA:   3'- -CGUCGACGUC-CaCAG----------CGCGCGACUgg -5'
13993 5' -58 NC_003521.1 + 14690 0.66 0.899141
Target:  5'- cGCcGCUGguGGUGgggcaucCGCGCcaacCUGugCa -3'
miRNA:   3'- -CGuCGACguCCACa------GCGCGc---GACugG- -5'
13993 5' -58 NC_003521.1 + 15223 0.7 0.748833
Target:  5'- -gGGCUGCAGGcgGcCGaGCGCgaGGCCg -3'
miRNA:   3'- cgUCGACGUCCa-CaGCgCGCGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 15317 0.7 0.70152
Target:  5'- aCGGCgccgaGCGGGUGaUCaGCGCGCUgGugCa -3'
miRNA:   3'- cGUCGa----CGUCCAC-AG-CGCGCGA-CugG- -5'
13993 5' -58 NC_003521.1 + 16060 0.68 0.835399
Target:  5'- cGCuGCUGCAcaacugccGGagcccCGaCGCGCUGGCCg -3'
miRNA:   3'- -CGuCGACGU--------CCaca--GC-GCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 16411 0.66 0.89286
Target:  5'- cGCAGCgccuggccgGCgAGGUGUaC-CG-GCUGGCCg -3'
miRNA:   3'- -CGUCGa--------CG-UCCACA-GcGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 17154 0.66 0.916695
Target:  5'- aGCAGCggcGCgAGGccgaggCGCaGCGCUGGCa -3'
miRNA:   3'- -CGUCGa--CG-UCCaca---GCG-CGCGACUGg -5'
13993 5' -58 NC_003521.1 + 17773 0.67 0.857641
Target:  5'- --uGCUGUgacgaugaccuggAGGccGUCgGCGUGCUGGCCg -3'
miRNA:   3'- cguCGACG-------------UCCa-CAG-CGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 18574 0.67 0.858381
Target:  5'- cGCAGCUGgAGa----GCGCGCUcGACUg -3'
miRNA:   3'- -CGUCGACgUCcacagCGCGCGA-CUGG- -5'
13993 5' -58 NC_003521.1 + 18907 0.69 0.793789
Target:  5'- cGCGGCaGCcccgaaGGGUGgcgcCGCGCGCcGGCa -3'
miRNA:   3'- -CGUCGaCG------UCCACa---GCGCGCGaCUGg -5'
13993 5' -58 NC_003521.1 + 19456 0.7 0.720663
Target:  5'- -aGGCgcgGCGGGaccaUGUCGCuGCGC-GGCCa -3'
miRNA:   3'- cgUCGa--CGUCC----ACAGCG-CGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 20383 0.79 0.285265
Target:  5'- uGUGGCUGCGGGUGUacgcCGUGCucgucuuucaGCUGGCCu -3'
miRNA:   3'- -CGUCGACGUCCACA----GCGCG----------CGACUGG- -5'
13993 5' -58 NC_003521.1 + 20746 0.66 0.92211
Target:  5'- uCAGCUGC--GUGUaCGCGCuGCUGguGCUg -3'
miRNA:   3'- cGUCGACGucCACA-GCGCG-CGAC--UGG- -5'
13993 5' -58 NC_003521.1 + 21354 0.71 0.682162
Target:  5'- aGCGcGCUGCuauGGUcGcUCGUGCcgcaGCUGACCg -3'
miRNA:   3'- -CGU-CGACGu--CCA-C-AGCGCG----CGACUGG- -5'
13993 5' -58 NC_003521.1 + 27024 0.66 0.912774
Target:  5'- uGUGGCUGCGccguuucGGcGUCcacaugcgcgucuaCGCGCUGGCCa -3'
miRNA:   3'- -CGUCGACGU-------CCaCAGc-------------GCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 27092 0.66 0.905209
Target:  5'- gGCAG-UGCAGGcucUCgacgGCGCGCaGGCCg -3'
miRNA:   3'- -CGUCgACGUCCac-AG----CGCGCGaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.