miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 53400 0.72 0.633236
Target:  5'- uGCAGCuccuUGCGGGcGUCGgGCGCc-ACCg -3'
miRNA:   3'- -CGUCG----ACGUCCaCAGCgCGCGacUGG- -5'
13993 5' -58 NC_003521.1 + 88170 0.73 0.555237
Target:  5'- cCAGCUcGCAGGUGaCgGCGuCGCUGAgCa -3'
miRNA:   3'- cGUCGA-CGUCCACaG-CGC-GCGACUgG- -5'
13993 5' -58 NC_003521.1 + 40422 0.73 0.57456
Target:  5'- cGguGCUGUccaccacggccAGGUGcUCGCGCGCUcuaGCCc -3'
miRNA:   3'- -CguCGACG-----------UCCAC-AGCGCGCGAc--UGG- -5'
13993 5' -58 NC_003521.1 + 31705 0.72 0.584281
Target:  5'- gGCGGCgGCAGcauGUG-CGCGUGCUGggacGCCg -3'
miRNA:   3'- -CGUCGaCGUC---CACaGCGCGCGAC----UGG- -5'
13993 5' -58 NC_003521.1 + 99876 0.72 0.594033
Target:  5'- gGCGGCcaccgucuccaUGUAGGgGUCGUGCggGUUGACCg -3'
miRNA:   3'- -CGUCG-----------ACGUCCaCAGCGCG--CGACUGG- -5'
13993 5' -58 NC_003521.1 + 128876 0.72 0.597942
Target:  5'- aGCAGCuucugcuugaagcucUGCAGGaUGUUGCuGCGCUGGa- -3'
miRNA:   3'- -CGUCG---------------ACGUCC-ACAGCG-CGCGACUgg -5'
13993 5' -58 NC_003521.1 + 87622 0.72 0.603812
Target:  5'- uGUGGCaGCAGGUGcCGC-CGCaGGCCu -3'
miRNA:   3'- -CGUCGaCGUCCACaGCGcGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 239258 0.72 0.613609
Target:  5'- aGCAGCgacgGCGGGUGUgGCGCcgagGCgaacGGCUc -3'
miRNA:   3'- -CGUCGa---CGUCCACAgCGCG----CGa---CUGG- -5'
13993 5' -58 NC_003521.1 + 144003 0.72 0.62342
Target:  5'- -aAGCUGguGGUGUgcaacccacaCGCGCGCUucCCc -3'
miRNA:   3'- cgUCGACguCCACA----------GCGCGCGAcuGG- -5'
13993 5' -58 NC_003521.1 + 37456 0.73 0.555237
Target:  5'- --cGCUGUGGGc-UCGCGCGCgGGCCa -3'
miRNA:   3'- cguCGACGUCCacAGCGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 181346 0.73 0.545645
Target:  5'- uGUAGCUGCAGcGUGaUUGuCGCGCccgGAUCg -3'
miRNA:   3'- -CGUCGACGUC-CAC-AGC-GCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 211039 0.73 0.536108
Target:  5'- aCAGCUGCAGGUGaaaUG-GCUGACCu -3'
miRNA:   3'- cGUCGACGUCCACagcGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 30239 0.77 0.339438
Target:  5'- cGC-GCUGCAGGUccgcgcgguugccGUgGCGCaGCUGACCc -3'
miRNA:   3'- -CGuCGACGUCCA-------------CAgCGCG-CGACUGG- -5'
13993 5' -58 NC_003521.1 + 168565 0.77 0.362644
Target:  5'- -gGGCUGCGGGUaagGUgGCG-GCUGACCc -3'
miRNA:   3'- cgUCGACGUCCA---CAgCGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 87855 0.76 0.386129
Target:  5'- --cGUUGUAGGUGuccUCGCagGCGCUGGCCa -3'
miRNA:   3'- cguCGACGUCCAC---AGCG--CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 137691 0.75 0.436003
Target:  5'- uGguGCUGCAGcaccGcCGCGCGCUGcGCCa -3'
miRNA:   3'- -CguCGACGUCca--CaGCGCGCGAC-UGG- -5'
13993 5' -58 NC_003521.1 + 148800 0.75 0.453436
Target:  5'- cGCGGCUGCGGacGUucaUCGUGCGCggcGACCg -3'
miRNA:   3'- -CGUCGACGUC--CAc--AGCGCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 29149 0.74 0.480276
Target:  5'- cCAGCUGCAGaccGUGUC-CGaGCUGGCCu -3'
miRNA:   3'- cGUCGACGUC---CACAGcGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 61443 0.74 0.517214
Target:  5'- aGCGGCUGCAGGUcauccgcaCGCGCGUcaagcaggUGACg -3'
miRNA:   3'- -CGUCGACGUCCAca------GCGCGCG--------ACUGg -5'
13993 5' -58 NC_003521.1 + 137297 0.73 0.535158
Target:  5'- -gAGCUGCGGGUGgCGCggcugcuGCGCggcGACCc -3'
miRNA:   3'- cgUCGACGUCCACaGCG-------CGCGa--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.