miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 87757 0.66 0.899141
Target:  5'- cCAGCUGCGGacagGUgGCGCagGCcagGGCCa -3'
miRNA:   3'- cGUCGACGUCca--CAgCGCG--CGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 32011 0.66 0.91106
Target:  5'- aCAGCUGCcgcagguaauuGGUG-CGCGUGCcgaagGACUu -3'
miRNA:   3'- cGUCGACGu----------CCACaGCGCGCGa----CUGG- -5'
13993 5' -58 NC_003521.1 + 115385 0.66 0.905209
Target:  5'- cCGGCaugUGCAGGg--CGCGgGC-GGCCg -3'
miRNA:   3'- cGUCG---ACGUCCacaGCGCgCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 239226 0.66 0.89286
Target:  5'- gGC-GCUGguGGaUGUgGCGCuGCacGGCCg -3'
miRNA:   3'- -CGuCGACguCC-ACAgCGCG-CGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 122109 0.66 0.89286
Target:  5'- uGCGGCUGCAGcggcGUcUCGCcGCgGCUGAa- -3'
miRNA:   3'- -CGUCGACGUC----CAcAGCG-CG-CGACUgg -5'
13993 5' -58 NC_003521.1 + 59357 0.66 0.899141
Target:  5'- --cGCUGCAGGcGgCGCGCcagccGCUGgacGCCg -3'
miRNA:   3'- cguCGACGUCCaCaGCGCG-----CGAC---UGG- -5'
13993 5' -58 NC_003521.1 + 27092 0.66 0.905209
Target:  5'- gGCAG-UGCAGGcucUCgacgGCGCGCaGGCCg -3'
miRNA:   3'- -CGUCgACGUCCac-AG----CGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 63143 0.66 0.905209
Target:  5'- -gAGCaGCAGcUG-CGCGgGCUGACg -3'
miRNA:   3'- cgUCGaCGUCcACaGCGCgCGACUGg -5'
13993 5' -58 NC_003521.1 + 34503 0.66 0.899141
Target:  5'- aGCAGCgagcGCAGGUa--GCGgcCGCgGGCCg -3'
miRNA:   3'- -CGUCGa---CGUCCAcagCGC--GCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 145145 0.66 0.89286
Target:  5'- uCAGCUGCuggagaAGGaGUCGCGCG---GCCa -3'
miRNA:   3'- cGUCGACG------UCCaCAGCGCGCgacUGG- -5'
13993 5' -58 NC_003521.1 + 78000 0.66 0.905209
Target:  5'- ---cUUGUAGGacagGUCGUccuuGCGCUGACCc -3'
miRNA:   3'- cgucGACGUCCa---CAGCG----CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 80365 0.66 0.905209
Target:  5'- aGCGGCUGCA--UGUacaUGCGaCGUUGGCg -3'
miRNA:   3'- -CGUCGACGUccACA---GCGC-GCGACUGg -5'
13993 5' -58 NC_003521.1 + 53506 0.66 0.899141
Target:  5'- cGCuGCUGC-GGcGUCGCagcggccgaugGUGCUGuCCg -3'
miRNA:   3'- -CGuCGACGuCCaCAGCG-----------CGCGACuGG- -5'
13993 5' -58 NC_003521.1 + 120468 0.66 0.91106
Target:  5'- aCAGCgacguccGCAGGUGUCuccgccgagagGCGCGUguggggGACg -3'
miRNA:   3'- cGUCGa------CGUCCACAG-----------CGCGCGa-----CUGg -5'
13993 5' -58 NC_003521.1 + 87289 0.66 0.897279
Target:  5'- gGCAGUaguccaggaugcgaUGCAGGcgauggGUgcgguccaCGCugGCGCUGACCa -3'
miRNA:   3'- -CGUCG--------------ACGUCCa-----CA--------GCG--CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 222007 0.66 0.904012
Target:  5'- uGCGGCguggGCGGGaagcacuUGgccaCGCgaaagcaGCGCUGGCCc -3'
miRNA:   3'- -CGUCGa---CGUCC-------ACa---GCG-------CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 148047 0.66 0.905209
Target:  5'- -aGGCUGUcgcccauguacgAGaUGUCGCGCGUcGACUg -3'
miRNA:   3'- cgUCGACG------------UCcACAGCGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 198193 0.66 0.889641
Target:  5'- cGCGGCUGCugacguguucccagcGGcccguaccgucacgcUGUCGCGCuaucaauaGCUGGCUg -3'
miRNA:   3'- -CGUCGACGu--------------CC---------------ACAGCGCG--------CGACUGG- -5'
13993 5' -58 NC_003521.1 + 97278 0.66 0.92211
Target:  5'- gGCGGCUGCugcucgucgccGGcGgcgCGCGUGCgGAUCa -3'
miRNA:   3'- -CGUCGACGu----------CCaCa--GCGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 99549 0.66 0.89286
Target:  5'- cGCAGCgGUAGGUGcccaUgGCGuUGUUGGCg -3'
miRNA:   3'- -CGUCGaCGUCCAC----AgCGC-GCGACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.