miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 196230 1.14 0.001375
Target:  5'- cGCAGCUGCAGGUGUCGCGCGCUGACCa -3'
miRNA:   3'- -CGUCGACGUCCACAGCGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 46190 0.81 0.205885
Target:  5'- -gGGCUGCAcggugcuGGUGUCguGCGCGCUGAUCa -3'
miRNA:   3'- cgUCGACGU-------CCACAG--CGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 20383 0.79 0.285265
Target:  5'- uGUGGCUGCGGGUGUacgcCGUGCucgucuuucaGCUGGCCu -3'
miRNA:   3'- -CGUCGACGUCCACA----GCGCG----------CGACUGG- -5'
13993 5' -58 NC_003521.1 + 145485 0.78 0.304995
Target:  5'- cGCAcGCUGCAGGUGgagcccugCGCGCGCgucuacgaGAUCa -3'
miRNA:   3'- -CGU-CGACGUCCACa-------GCGCGCGa-------CUGG- -5'
13993 5' -58 NC_003521.1 + 30239 0.77 0.339438
Target:  5'- cGC-GCUGCAGGUccgcgcgguugccGUgGCGCaGCUGACCc -3'
miRNA:   3'- -CGuCGACGUCCA-------------CAgCGCG-CGACUGG- -5'
13993 5' -58 NC_003521.1 + 168565 0.77 0.362644
Target:  5'- -gGGCUGCGGGUaagGUgGCG-GCUGACCc -3'
miRNA:   3'- cgUCGACGUCCA---CAgCGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 87242 0.76 0.37819
Target:  5'- uGCuGCUGCAGGUGguggaGCG-GCUGugCg -3'
miRNA:   3'- -CGuCGACGUCCACag---CGCgCGACugG- -5'
13993 5' -58 NC_003521.1 + 87855 0.76 0.386129
Target:  5'- --cGUUGUAGGUGuccUCGCagGCGCUGGCCa -3'
miRNA:   3'- cguCGACGUCCAC---AGCG--CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 14640 0.76 0.394178
Target:  5'- aGCAGCUGCAGuGcGUCuggcccuucuGCGCGCUGAa- -3'
miRNA:   3'- -CGUCGACGUC-CaCAG----------CGCGCGACUgg -5'
13993 5' -58 NC_003521.1 + 114018 0.75 0.427433
Target:  5'- aGguGCUGgAGGUG-CGCGCggaGCUGgACCa -3'
miRNA:   3'- -CguCGACgUCCACaGCGCG---CGAC-UGG- -5'
13993 5' -58 NC_003521.1 + 137691 0.75 0.436003
Target:  5'- uGguGCUGCAGcaccGcCGCGCGCUGcGCCa -3'
miRNA:   3'- -CguCGACGUCca--CaGCGCGCGAC-UGG- -5'
13993 5' -58 NC_003521.1 + 164302 0.75 0.444672
Target:  5'- aCGGCgcagGCccuGGUGUCGCGCGgucccgcuCUGGCCg -3'
miRNA:   3'- cGUCGa---CGu--CCACAGCGCGC--------GACUGG- -5'
13993 5' -58 NC_003521.1 + 148800 0.75 0.453436
Target:  5'- cGCGGCUGCGGacGUucaUCGUGCGCggcGACCg -3'
miRNA:   3'- -CGUCGACGUC--CAc--AGCGCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 180219 0.75 0.471241
Target:  5'- gGC-GUUGguGGUGcCGCGCGUgugGGCCu -3'
miRNA:   3'- -CGuCGACguCCACaGCGCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 29149 0.74 0.480276
Target:  5'- cCAGCUGCAGaccGUGUC-CGaGCUGGCCu -3'
miRNA:   3'- cGUCGACGUC---CACAGcGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 124230 0.74 0.498593
Target:  5'- cGCAGCgacuUGCAGGgaggGcCGCGCGa-GACCa -3'
miRNA:   3'- -CGUCG----ACGUCCa---CaGCGCGCgaCUGG- -5'
13993 5' -58 NC_003521.1 + 197720 0.74 0.517214
Target:  5'- cGCAGC-GCuuGGUcagcucGUCGCGCGCguaGGCCa -3'
miRNA:   3'- -CGUCGaCGu-CCA------CAGCGCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 61443 0.74 0.517214
Target:  5'- aGCGGCUGCAGGUcauccgcaCGCGCGUcaagcaggUGACg -3'
miRNA:   3'- -CGUCGACGUCCAca------GCGCGCG--------ACUGg -5'
13993 5' -58 NC_003521.1 + 95647 0.73 0.526629
Target:  5'- aGCAGgUGCcagacGGaGUUGCGCGaCUGGCCg -3'
miRNA:   3'- -CGUCgACGu----CCaCAGCGCGC-GACUGG- -5'
13993 5' -58 NC_003521.1 + 99690 0.73 0.530413
Target:  5'- cGCGGCcgaaaCAGGUGUCGCGgGCgcagaagcugcgcgGGCCg -3'
miRNA:   3'- -CGUCGac---GUCCACAGCGCgCGa-------------CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.