miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 61255 0.66 0.694685
Target:  5'- aGCGuCgCGGUGUGGGGCCa--GUGuCGCa -3'
miRNA:   3'- -CGU-GgGCCGCGCUCCGGgacCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 62115 0.69 0.482945
Target:  5'- gGCGCCC-GCGCGGGGaaCCaaUGcGUGUGCa -3'
miRNA:   3'- -CGUGGGcCGCGCUCCg-GG--AC-CACGCG- -5'
13995 3' -64 NC_003521.1 + 64345 0.66 0.703908
Target:  5'- -aGCCa-GCuGC-AGGCCCUGG-GCGCc -3'
miRNA:   3'- cgUGGgcCG-CGcUCCGGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 66645 0.74 0.275869
Target:  5'- cGCACCUGucgaccuucguGCGCGgccugcAGGCCCUGGaGCGUc -3'
miRNA:   3'- -CGUGGGC-----------CGCGC------UCCGGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 69078 0.66 0.69376
Target:  5'- -gACCCgugucaugaugguGGCGUGGuGGUaCUUGGUGUGCa -3'
miRNA:   3'- cgUGGG-------------CCGCGCU-CCG-GGACCACGCG- -5'
13995 3' -64 NC_003521.1 + 70223 0.68 0.563926
Target:  5'- aGCGCuuGGCGCGcagcaGGGCUaggcagggcgagCUGGUgggGUGCa -3'
miRNA:   3'- -CGUGggCCGCGC-----UCCGG------------GACCA---CGCG- -5'
13995 3' -64 NC_003521.1 + 72025 0.67 0.638665
Target:  5'- uGCGCCgcgUGGCcuGCaccAGGUCCUGGUGCa- -3'
miRNA:   3'- -CGUGG---GCCG--CGc--UCCGGGACCACGcg -5'
13995 3' -64 NC_003521.1 + 74129 0.73 0.312876
Target:  5'- gGCGCCgugcaggacgacgUGGCGCGccacgGGGCCCaGGUGcCGCu -3'
miRNA:   3'- -CGUGG-------------GCCGCGC-----UCCGGGaCCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 74191 0.76 0.211502
Target:  5'- gGCGCCCGGCGCGcGGCCCga---CGCc -3'
miRNA:   3'- -CGUGGGCCGCGCuCCGGGaccacGCG- -5'
13995 3' -64 NC_003521.1 + 74625 0.72 0.347803
Target:  5'- cGCGCCaacagcggggUGGUGCGcGGGaCCCUGGaGCGCc -3'
miRNA:   3'- -CGUGG----------GCCGCGC-UCC-GGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 77718 0.69 0.518335
Target:  5'- cGUugUUGGCGaCGGcGGCCUcGGUGgGCg -3'
miRNA:   3'- -CGugGGCCGC-GCU-CCGGGaCCACgCG- -5'
13995 3' -64 NC_003521.1 + 78448 0.66 0.694685
Target:  5'- aCAUCCucuucGGCGCGGcugggaacgcGGCCC-GGcGCGCg -3'
miRNA:   3'- cGUGGG-----CCGCGCU----------CCGGGaCCaCGCG- -5'
13995 3' -64 NC_003521.1 + 80975 0.66 0.68449
Target:  5'- -gACggGGCGCGAguagcagcGGCCCuucuccuUGGUGUGCa -3'
miRNA:   3'- cgUGggCCGCGCU--------CCGGG-------ACCACGCG- -5'
13995 3' -64 NC_003521.1 + 84217 0.66 0.704827
Target:  5'- aGCACCaGGCGCGAgaGGCCgCgcugcaccaccucggGGUGgaUGCg -3'
miRNA:   3'- -CGUGGgCCGCGCU--CCGG-Ga--------------CCAC--GCG- -5'
13995 3' -64 NC_003521.1 + 86327 0.69 0.518335
Target:  5'- aGCACCUGGaUGCugGAGGUCUUGccgGCGCc -3'
miRNA:   3'- -CGUGGGCC-GCG--CUCCGGGACca-CGCG- -5'
13995 3' -64 NC_003521.1 + 87128 0.69 0.518335
Target:  5'- cGCGuCCCaaggaGCGCGAGGUgUUGGagcggGCGCa -3'
miRNA:   3'- -CGU-GGGc----CGCGCUCCGgGACCa----CGCG- -5'
13995 3' -64 NC_003521.1 + 87266 0.76 0.193105
Target:  5'- uGUGCgCCGuGCGCGuggccaacGGGCCCgaGGUGCGCg -3'
miRNA:   3'- -CGUG-GGC-CGCGC--------UCCGGGa-CCACGCG- -5'
13995 3' -64 NC_003521.1 + 87729 0.72 0.34074
Target:  5'- cGCGCCCGGCgGCGugguGGGCCCcGGcccGgGCc -3'
miRNA:   3'- -CGUGGGCCG-CGC----UCCGGGaCCa--CgCG- -5'
13995 3' -64 NC_003521.1 + 87783 0.66 0.676116
Target:  5'- aGgGCCaGGUGCuGAGGCCCgua-GCGCu -3'
miRNA:   3'- -CgUGGgCCGCG-CUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 87970 0.71 0.400116
Target:  5'- aCGCCucgCGGCGCGAGGacucggugaaUCUGGggGCGCg -3'
miRNA:   3'- cGUGG---GCCGCGCUCCg---------GGACCa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.