miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 24792 0.69 0.509386
Target:  5'- uUACCC-GCGacuGGCCCUGGgcccUGCGCu -3'
miRNA:   3'- cGUGGGcCGCgcuCCGGGACC----ACGCG- -5'
13995 3' -64 NC_003521.1 + 28822 0.7 0.474279
Target:  5'- aGUACCUGGCGUGucugcGGCgCCUGGacgacgagcUGCGg -3'
miRNA:   3'- -CGUGGGCCGCGCu----CCG-GGACC---------ACGCg -5'
13995 3' -64 NC_003521.1 + 32356 0.66 0.657425
Target:  5'- cGgAgCCGGCGggaCGGGGCuUUUGGUGgCGCg -3'
miRNA:   3'- -CgUgGGCCGC---GCUCCG-GGACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 34342 0.67 0.610509
Target:  5'- gGCGCagggcggaGGcCGUGAGGCCCaGGUccugggcguuGCGCa -3'
miRNA:   3'- -CGUGgg------CC-GCGCUCCGGGaCCA----------CGCG- -5'
13995 3' -64 NC_003521.1 + 36292 0.72 0.369613
Target:  5'- cGCACCuCGGacCGCGAcaacuacgGGCgCUGcGUGCGCu -3'
miRNA:   3'- -CGUGG-GCC--GCGCU--------CCGgGAC-CACGCG- -5'
13995 3' -64 NC_003521.1 + 36695 0.69 0.517437
Target:  5'- cGgGCuCCGGCGCcuGGCCCgagcaggUGGagGCGCa -3'
miRNA:   3'- -CgUG-GGCCGCGcuCCGGG-------ACCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 36734 0.69 0.527346
Target:  5'- gGCGCCaccaGGUGCacguGGCCCacgacgugUGGUGCGa -3'
miRNA:   3'- -CGUGGg---CCGCGcu--CCGGG--------ACCACGCg -5'
13995 3' -64 NC_003521.1 + 37403 0.71 0.400116
Target:  5'- gGCGCCCGGgccuugUGCGAcGG-CCUGGgagGCGUg -3'
miRNA:   3'- -CGUGGGCC------GCGCU-CCgGGACCa--CGCG- -5'
13995 3' -64 NC_003521.1 + 37463 0.69 0.482945
Target:  5'- -gGCUCGcGCGCG-GGCCaccgUGGUGcCGCa -3'
miRNA:   3'- cgUGGGC-CGCGCuCCGGg---ACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 39451 0.68 0.537325
Target:  5'- -aGCCCGGCGcCGAGGgCCgcgucgaaggauugcGGaucgGCGCa -3'
miRNA:   3'- cgUGGGCCGC-GCUCCgGGa--------------CCa---CGCG- -5'
13995 3' -64 NC_003521.1 + 39584 0.67 0.629276
Target:  5'- cCugCCGGCGuCGGcgguccuGCCCUGGgugGCGg -3'
miRNA:   3'- cGugGGCCGC-GCUc------CGGGACCa--CGCg -5'
13995 3' -64 NC_003521.1 + 39847 0.69 0.482945
Target:  5'- gGCcUCCGGCGUGGGGCUUgcacgUGGUGgGg -3'
miRNA:   3'- -CGuGGGCCGCGCUCCGGG-----ACCACgCg -5'
13995 3' -64 NC_003521.1 + 40821 0.68 0.536415
Target:  5'- uCGCCuCGGgGCGGGGCCC----GCGCc -3'
miRNA:   3'- cGUGG-GCCgCGCUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 43131 0.72 0.347092
Target:  5'- aGCGCUCGGCGCuGGGCguggaggugcacgCgCUGGUGgCGCu -3'
miRNA:   3'- -CGUGGGCCGCGcUCCG-------------G-GACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 44375 0.71 0.407989
Target:  5'- -gGCCCacGCcCGAGGCCgaGGUGCGUu -3'
miRNA:   3'- cgUGGGc-CGcGCUCCGGgaCCACGCG- -5'
13995 3' -64 NC_003521.1 + 44706 0.67 0.601143
Target:  5'- gGUACCCGagacGCGCcAGaUCCUGGUGaCGCu -3'
miRNA:   3'- -CGUGGGC----CGCGcUCcGGGACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 45643 0.66 0.703908
Target:  5'- cGC-CgCCGGCuccGCGGGGUCCg---GCGCa -3'
miRNA:   3'- -CGuG-GGCCG---CGCUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 46378 0.67 0.610509
Target:  5'- cGCGgCUgugaggGGCGCGGGGUgCgUGGgGCGCg -3'
miRNA:   3'- -CGUgGG------CCGCGCUCCGgG-ACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 59620 0.71 0.407989
Target:  5'- gGC-CCCGGCgGCGAccgcggcucgcaGGCgUUGGUGCGg -3'
miRNA:   3'- -CGuGGGCCG-CGCU------------CCGgGACCACGCg -5'
13995 3' -64 NC_003521.1 + 60688 0.68 0.563926
Target:  5'- uGCGgCC-GCGCGGGGgaCCCgGGggcgGCGCg -3'
miRNA:   3'- -CGUgGGcCGCGCUCC--GGGaCCa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.