miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 12751 0.66 0.657425
Target:  5'- gGCGCCuCGGaCGUGAgcugGGaCCCgcgcGUGCGCc -3'
miRNA:   3'- -CGUGG-GCC-GCGCU----CC-GGGac--CACGCG- -5'
13995 3' -64 NC_003521.1 + 184791 0.66 0.666782
Target:  5'- cGCGCCUGGaCGCccugguGGCCgccuccgaCUGGUGgGUg -3'
miRNA:   3'- -CGUGGGCC-GCGcu----CCGG--------GACCACgCG- -5'
13995 3' -64 NC_003521.1 + 17422 0.66 0.657425
Target:  5'- cGCGCCgGGgCGCcacacGGCCCgcgucgGG-GCGCc -3'
miRNA:   3'- -CGUGGgCC-GCGcu---CCGGGa-----CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 214523 0.66 0.657425
Target:  5'- aGCGCggaCaGCGCGuGGCCCUGGccUG-GCc -3'
miRNA:   3'- -CGUGg--GcCGCGCuCCGGGACC--ACgCG- -5'
13995 3' -64 NC_003521.1 + 45643 0.66 0.703908
Target:  5'- cGC-CgCCGGCuccGCGGGGUCCg---GCGCa -3'
miRNA:   3'- -CGuG-GGCCG---CGCUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 109388 0.66 0.694685
Target:  5'- -gGCCaGGuCGCGgaAGGCgCUcagGGUGCGCg -3'
miRNA:   3'- cgUGGgCC-GCGC--UCCGgGA---CCACGCG- -5'
13995 3' -64 NC_003521.1 + 122679 0.66 0.694685
Target:  5'- gGCGCCCaGCaccgacagcuGCGGGGCCggucGGuUGUGCa -3'
miRNA:   3'- -CGUGGGcCG----------CGCUCCGGga--CC-ACGCG- -5'
13995 3' -64 NC_003521.1 + 103662 0.66 0.694685
Target:  5'- aGCACCUGGCccuccGUGuGGCCgaaGGUGCu- -3'
miRNA:   3'- -CGUGGGCCG-----CGCuCCGGga-CCACGcg -5'
13995 3' -64 NC_003521.1 + 87783 0.66 0.676116
Target:  5'- aGgGCCaGGUGCuGAGGCCCgua-GCGCu -3'
miRNA:   3'- -CgUGGgCCGCG-CUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 100183 0.66 0.685419
Target:  5'- gGCGCCaGGCGC-AGGCUCUcGGccGUGUa -3'
miRNA:   3'- -CGUGGgCCGCGcUCCGGGA-CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 197322 0.66 0.703908
Target:  5'- -gAUCUGGUcgGCcAGGCCCUGG-GCGa -3'
miRNA:   3'- cgUGGGCCG--CGcUCCGGGACCaCGCg -5'
13995 3' -64 NC_003521.1 + 91993 0.66 0.676116
Target:  5'- cGCACCuCGGC-CGAGGgCaggcGGUcgccGCGCa -3'
miRNA:   3'- -CGUGG-GCCGcGCUCCgGga--CCA----CGCG- -5'
13995 3' -64 NC_003521.1 + 177389 0.66 0.676116
Target:  5'- uGCAUCUuGCGCagguuGAGuCCgUGGUGCGCc -3'
miRNA:   3'- -CGUGGGcCGCG-----CUCcGGgACCACGCG- -5'
13995 3' -64 NC_003521.1 + 152272 0.66 0.657425
Target:  5'- cCAgCUGGUGCccugccccgagGAGGCCgUuucGGUGCGCc -3'
miRNA:   3'- cGUgGGCCGCG-----------CUCCGGgA---CCACGCG- -5'
13995 3' -64 NC_003521.1 + 126408 0.66 0.694685
Target:  5'- -aGCCCGG-GUGgauguGGGCCUUGGUcUGCa -3'
miRNA:   3'- cgUGGGCCgCGC-----UCCGGGACCAcGCG- -5'
13995 3' -64 NC_003521.1 + 226281 0.66 0.703908
Target:  5'- uGCGCUCGGCcgugGCGuacGaGCCCUcGG-GCGUg -3'
miRNA:   3'- -CGUGGGCCG----CGCu--C-CGGGA-CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 116609 0.66 0.670518
Target:  5'- cGgGCCCGGuCGCGggccagaaaGGGCCCgcucacccccagccGGcagGCGCa -3'
miRNA:   3'- -CgUGGGCC-GCGC---------UCCGGGa-------------CCa--CGCG- -5'
13995 3' -64 NC_003521.1 + 15133 0.66 0.657425
Target:  5'- gGCGCCUGGgaGCGccuGGaccccaacGCCUUGGUGCuGCa -3'
miRNA:   3'- -CGUGGGCCg-CGC---UC--------CGGGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 213396 0.66 0.685419
Target:  5'- -gGCCUGGgcUGCcugGAGGCCUacGUGCGCa -3'
miRNA:   3'- cgUGGGCC--GCG---CUCCGGGacCACGCG- -5'
13995 3' -64 NC_003521.1 + 181393 0.66 0.685419
Target:  5'- cGCugCCGGCgGCGGcGCCgCUGucGCGUg -3'
miRNA:   3'- -CGugGGCCG-CGCUcCGG-GACcaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.