miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 100183 0.66 0.685419
Target:  5'- gGCGCCaGGCGC-AGGCUCUcGGccGUGUa -3'
miRNA:   3'- -CGUGGgCCGCGcUCCGGGA-CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 64345 0.66 0.703908
Target:  5'- -aGCCa-GCuGC-AGGCCCUGG-GCGCc -3'
miRNA:   3'- cgUGGgcCG-CGcUCCGGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 80975 0.66 0.68449
Target:  5'- -gACggGGCGCGAguagcagcGGCCCuucuccuUGGUGUGCa -3'
miRNA:   3'- cgUGggCCGCGCU--------CCGGG-------ACCACGCG- -5'
13995 3' -64 NC_003521.1 + 122679 0.66 0.694685
Target:  5'- gGCGCCCaGCaccgacagcuGCGGGGCCggucGGuUGUGCa -3'
miRNA:   3'- -CGUGGGcCG----------CGCUCCGGga--CC-ACGCG- -5'
13995 3' -64 NC_003521.1 + 137240 0.66 0.666782
Target:  5'- cGCGCaCCGGC-CGGGGCCgacGGcgGCaGCg -3'
miRNA:   3'- -CGUG-GGCCGcGCUCCGGga-CCa-CG-CG- -5'
13995 3' -64 NC_003521.1 + 129919 0.66 0.657425
Target:  5'- cGCGCCUGcuGCGCGAacaccuGGCCgaGacgGCGCa -3'
miRNA:   3'- -CGUGGGC--CGCGCU------CCGGgaCca-CGCG- -5'
13995 3' -64 NC_003521.1 + 181781 0.66 0.676116
Target:  5'- aGCGCCCGGUagucGCGA--UCCUcGUGCGUc -3'
miRNA:   3'- -CGUGGGCCG----CGCUccGGGAcCACGCG- -5'
13995 3' -64 NC_003521.1 + 126408 0.66 0.694685
Target:  5'- -aGCCCGG-GUGgauguGGGCCUUGGUcUGCa -3'
miRNA:   3'- cgUGGGCCgCGC-----UCCGGGACCAcGCG- -5'
13995 3' -64 NC_003521.1 + 166279 0.66 0.666782
Target:  5'- cGCGCaCGGCGCGGcuGGUCCgcgUGGccucguUGCGUa -3'
miRNA:   3'- -CGUGgGCCGCGCU--CCGGG---ACC------ACGCG- -5'
13995 3' -64 NC_003521.1 + 134921 0.66 0.675183
Target:  5'- gGCGCCCGGCaUGAacauguuGGCCgUcuUGCGCa -3'
miRNA:   3'- -CGUGGGCCGcGCU-------CCGGgAccACGCG- -5'
13995 3' -64 NC_003521.1 + 127336 0.66 0.703908
Target:  5'- gGCugCCGGUcggccacgaucuGCac-GCCCuccgUGGUGCGCg -3'
miRNA:   3'- -CGugGGCCG------------CGcucCGGG----ACCACGCG- -5'
13995 3' -64 NC_003521.1 + 10491 0.66 0.69376
Target:  5'- aGCAUgcgCCGGCggggaugGCGuGGCCCcccaGGcgGCGCg -3'
miRNA:   3'- -CGUG---GGCCG-------CGCuCCGGGa---CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 87783 0.66 0.676116
Target:  5'- aGgGCCaGGUGCuGAGGCCCgua-GCGCu -3'
miRNA:   3'- -CgUGGgCCGCG-CUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 103662 0.66 0.694685
Target:  5'- aGCACCUGGCccuccGUGuGGCCgaaGGUGCu- -3'
miRNA:   3'- -CGUGGGCCG-----CGCuCCGGga-CCACGcg -5'
13995 3' -64 NC_003521.1 + 193590 0.66 0.68449
Target:  5'- uCACCCGGuCGCGGuuuucGCCCcuUGGUcgguguguugcccGCGCu -3'
miRNA:   3'- cGUGGGCC-GCGCUc----CGGG--ACCA-------------CGCG- -5'
13995 3' -64 NC_003521.1 + 197322 0.66 0.703908
Target:  5'- -gAUCUGGUcgGCcAGGCCCUGG-GCGa -3'
miRNA:   3'- cgUGGGCCG--CGcUCCGGGACCaCGCg -5'
13995 3' -64 NC_003521.1 + 84217 0.66 0.704827
Target:  5'- aGCACCaGGCGCGAgaGGCCgCgcugcaccaccucggGGUGgaUGCg -3'
miRNA:   3'- -CGUGGgCCGCGCU--CCGG-Ga--------------CCAC--GCG- -5'
13995 3' -64 NC_003521.1 + 111179 0.66 0.676116
Target:  5'- cGC-CCCGGCGaCGGcGCCgCggacGGUGgGCu -3'
miRNA:   3'- -CGuGGGCCGC-GCUcCGG-Ga---CCACgCG- -5'
13995 3' -64 NC_003521.1 + 109388 0.66 0.694685
Target:  5'- -gGCCaGGuCGCGgaAGGCgCUcagGGUGCGCg -3'
miRNA:   3'- cgUGGgCC-GCGC--UCCGgGA---CCACGCG- -5'
13995 3' -64 NC_003521.1 + 223391 0.66 0.657425
Target:  5'- gGCGCCCcGaCGCG-GGCCgUGuG-GCGCc -3'
miRNA:   3'- -CGUGGGcC-GCGCuCCGGgAC-CaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.