miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 2315 0.66 0.703908
Target:  5'- cGCACCUGcuGCGCGccGGCcuCCUGGgGCuGCu -3'
miRNA:   3'- -CGUGGGC--CGCGCu-CCG--GGACCaCG-CG- -5'
13995 3' -64 NC_003521.1 + 5833 0.74 0.264143
Target:  5'- gGguCCCGGCGacCGGGGCCCUuuuaugcgauccGG-GCGCg -3'
miRNA:   3'- -CguGGGCCGC--GCUCCGGGA------------CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 10491 0.66 0.69376
Target:  5'- aGCAUgcgCCGGCggggaugGCGuGGCCCcccaGGcgGCGCg -3'
miRNA:   3'- -CGUG---GGCCG-------CGCuCCGGGa---CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 12751 0.66 0.657425
Target:  5'- gGCGCCuCGGaCGUGAgcugGGaCCCgcgcGUGCGCc -3'
miRNA:   3'- -CGUGG-GCC-GCGCU----CC-GGGac--CACGCG- -5'
13995 3' -64 NC_003521.1 + 13852 0.71 0.407989
Target:  5'- -gGCUCGGCGCGGGGgUCUcugcGGgcgGCGCc -3'
miRNA:   3'- cgUGGGCCGCGCUCCgGGA----CCa--CGCG- -5'
13995 3' -64 NC_003521.1 + 13903 0.72 0.35497
Target:  5'- -gGCCCGGCGCGgaggGGGCCgCggaGGccGCGCu -3'
miRNA:   3'- cgUGGGCCGCGC----UCCGG-Ga--CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 13986 0.67 0.619888
Target:  5'- -uGCCCGGCGCGgcggcgggcgAGGaCCCcaugGCGCu -3'
miRNA:   3'- cgUGGGCCGCGC----------UCC-GGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 14180 0.68 0.536415
Target:  5'- aGCGCCaagaaGGcCGCGA-GCaagCUGGUGUGCu -3'
miRNA:   3'- -CGUGGg----CC-GCGCUcCGg--GACCACGCG- -5'
13995 3' -64 NC_003521.1 + 14358 0.7 0.45212
Target:  5'- aGUACCUGGUGCuGGuGGCCCacaaccuggacgagcUGGcGCGCu -3'
miRNA:   3'- -CGUGGGCCGCG-CU-CCGGG---------------ACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 14771 0.74 0.264143
Target:  5'- cGCGCCUucguGGC-CGAGGUgCUGGUGCuGCu -3'
miRNA:   3'- -CGUGGG----CCGcGCUCCGgGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 15133 0.66 0.657425
Target:  5'- gGCGCCUGGgaGCGccuGGaccccaacGCCUUGGUGCuGCa -3'
miRNA:   3'- -CGUGGGCCg-CGC---UC--------CGGGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 15231 0.69 0.491687
Target:  5'- gGCGgCCGaGCGCGAGGCCgccgaGCGCc -3'
miRNA:   3'- -CGUgGGC-CGCGCUCCGGgaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 15311 0.67 0.601143
Target:  5'- cGCGCgaCGGCGcCGAGcgggugaucagcGCgCUGGUGCaGCa -3'
miRNA:   3'- -CGUGg-GCCGC-GCUC------------CGgGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 15828 0.67 0.591796
Target:  5'- cGUGCUgGGCaaguGCGuGGUgCUGGUGgGCg -3'
miRNA:   3'- -CGUGGgCCG----CGCuCCGgGACCACgCG- -5'
13995 3' -64 NC_003521.1 + 17154 0.74 0.281886
Target:  5'- aGCAgC-GGCGCGAGGCCgaGGcgcaGCGCu -3'
miRNA:   3'- -CGUgGgCCGCGCUCCGGgaCCa---CGCG- -5'
13995 3' -64 NC_003521.1 + 17422 0.66 0.657425
Target:  5'- cGCGCCgGGgCGCcacacGGCCCgcgucgGG-GCGCc -3'
miRNA:   3'- -CGUGGgCC-GCGcu---CCGGGa-----CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 17689 0.7 0.432178
Target:  5'- -aACCCGGCcaacuGGCuCCUGGUGCuGCg -3'
miRNA:   3'- cgUGGGCCGcgcu-CCG-GGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 18535 0.68 0.573183
Target:  5'- uGCuACgCUGGCaCGGGGCUCUGGgcaccaucacGCGCg -3'
miRNA:   3'- -CG-UG-GGCCGcGCUCCGGGACCa---------CGCG- -5'
13995 3' -64 NC_003521.1 + 18702 0.67 0.601143
Target:  5'- -uGgCCGGCGCGAuccGGCUgUGGcUGcCGCu -3'
miRNA:   3'- cgUgGGCCGCGCU---CCGGgACC-AC-GCG- -5'
13995 3' -64 NC_003521.1 + 22363 0.67 0.638665
Target:  5'- uGCGCCCacGGCGUGGugccGGCCauguccuccgUGGUGcCGCc -3'
miRNA:   3'- -CGUGGG--CCGCGCU----CCGGg---------ACCAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.