miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 137954 0.7 0.448761
Target:  5'- -aGCCCGaGCGCGuguGGUaugCCgacgUGGUGCGCu -3'
miRNA:   3'- cgUGGGC-CGCGCu--CCG---GG----ACCACGCG- -5'
13995 3' -64 NC_003521.1 + 74625 0.72 0.347803
Target:  5'- cGCGCCaacagcggggUGGUGCGcGGGaCCCUGGaGCGCc -3'
miRNA:   3'- -CGUGG----------GCCGCGC-UCC-GGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 36292 0.72 0.369613
Target:  5'- cGCACCuCGGacCGCGAcaacuacgGGCgCUGcGUGCGCu -3'
miRNA:   3'- -CGUGG-GCC--GCGCU--------CCGgGAC-CACGCG- -5'
13995 3' -64 NC_003521.1 + 209549 0.71 0.377088
Target:  5'- uGCGCCCGGCgggguggcgGCGAcgguggcgggGGUCCgGGgGCGCa -3'
miRNA:   3'- -CGUGGGCCG---------CGCU----------CCGGGaCCaCGCG- -5'
13995 3' -64 NC_003521.1 + 115429 0.71 0.39234
Target:  5'- aGCGCCgCGGCGCGGGGgUgacggUGGuUGUGCg -3'
miRNA:   3'- -CGUGG-GCCGCGCUCCgGg----ACC-ACGCG- -5'
13995 3' -64 NC_003521.1 + 117482 0.71 0.400116
Target:  5'- aCACCCGGCGaCG-GGCCUguccggcgGG-GCGUa -3'
miRNA:   3'- cGUGGGCCGC-GCuCCGGGa-------CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 44375 0.71 0.407989
Target:  5'- -gGCCCacGCcCGAGGCCgaGGUGCGUu -3'
miRNA:   3'- cgUGGGc-CGcGCUCCGGgaCCACGCG- -5'
13995 3' -64 NC_003521.1 + 59620 0.71 0.407989
Target:  5'- gGC-CCCGGCgGCGAccgcggcucgcaGGCgUUGGUGCGg -3'
miRNA:   3'- -CGuGGGCCG-CGCU------------CCGgGACCACGCg -5'
13995 3' -64 NC_003521.1 + 156619 0.7 0.440425
Target:  5'- cGCGCCUGGUgcugcGCGAcGCCCUGG-GCu- -3'
miRNA:   3'- -CGUGGGCCG-----CGCUcCGGGACCaCGcg -5'
13995 3' -64 NC_003521.1 + 43131 0.72 0.347092
Target:  5'- aGCGCUCGGCGCuGGGCguggaggugcacgCgCUGGUGgCGCu -3'
miRNA:   3'- -CGUGGGCCGCGcUCCG-------------G-GACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 126552 0.72 0.34074
Target:  5'- gGUACUCGuGCGCGaAGGCCgUGG-GCaGCg -3'
miRNA:   3'- -CGUGGGC-CGCGC-UCCGGgACCaCG-CG- -5'
13995 3' -64 NC_003521.1 + 112434 0.72 0.34074
Target:  5'- aCGCCCgcucaGGCGgcccaGGcGGCCCUGGUGgGCg -3'
miRNA:   3'- cGUGGG-----CCGCg----CU-CCGGGACCACgCG- -5'
13995 3' -64 NC_003521.1 + 74191 0.76 0.211502
Target:  5'- gGCGCCCGGCGCGcGGCCCga---CGCc -3'
miRNA:   3'- -CGUGGGCCGCGCuCCGGGaccacGCG- -5'
13995 3' -64 NC_003521.1 + 5833 0.74 0.264143
Target:  5'- gGguCCCGGCGacCGGGGCCCUuuuaugcgauccGG-GCGCg -3'
miRNA:   3'- -CguGGGCCGC--GCUCCGGGA------------CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 66645 0.74 0.275869
Target:  5'- cGCACCUGucgaccuucguGCGCGgccugcAGGCCCUGGaGCGUc -3'
miRNA:   3'- -CGUGGGC-----------CGCGC------UCCGGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 138034 0.73 0.294232
Target:  5'- cGCugCCGGCGCacGGGGCUgUGG-GuCGCc -3'
miRNA:   3'- -CGugGGCCGCG--CUCCGGgACCaC-GCG- -5'
13995 3' -64 NC_003521.1 + 127272 0.73 0.312219
Target:  5'- gGCGCCCaGGCGCGGcacguccgacacGCCgUGGUGgCGCg -3'
miRNA:   3'- -CGUGGG-CCGCGCUc-----------CGGgACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 74129 0.73 0.312876
Target:  5'- gGCGCCgugcaggacgacgUGGCGCGccacgGGGCCCaGGUGcCGCu -3'
miRNA:   3'- -CGUGG-------------GCCGCGC-----UCCGGGaCCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 216203 0.72 0.333782
Target:  5'- aGCA-CCGGCGCGGGGUccuCCUGGcacaCGCa -3'
miRNA:   3'- -CGUgGGCCGCGCUCCG---GGACCac--GCG- -5'
13995 3' -64 NC_003521.1 + 168661 0.72 0.333782
Target:  5'- gGCAUgccgaCGGCGCcgGAGGuCCCUGGUG-GCa -3'
miRNA:   3'- -CGUGg----GCCGCG--CUCC-GGGACCACgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.