miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 194278 1.11 0.000724
Target:  5'- aGCACCCGGCGCGAGGCCCUGGUGCGCc -3'
miRNA:   3'- -CGUGGGCCGCGCUCCGGGACCACGCG- -5'
13995 3' -64 NC_003521.1 + 87729 0.72 0.34074
Target:  5'- cGCGCCCGGCgGCGugguGGGCCCcGGcccGgGCc -3'
miRNA:   3'- -CGUGGGCCG-CGC----UCCGGGaCCa--CgCG- -5'
13995 3' -64 NC_003521.1 + 13903 0.72 0.35497
Target:  5'- -gGCCCGGCGCGgaggGGGCCgCggaGGccGCGCu -3'
miRNA:   3'- cgUGGGCCGCGC----UCCGG-Ga--CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 84217 0.66 0.704827
Target:  5'- aGCACCaGGCGCGAgaGGCCgCgcugcaccaccucggGGUGgaUGCg -3'
miRNA:   3'- -CGUGGgCCGCGCU--CCGG-Ga--------------CCAC--GCG- -5'
13995 3' -64 NC_003521.1 + 209998 0.76 0.193105
Target:  5'- gGCGCCCGuggaguuCGCGgguuucgccggcGGGCCCUcGGUGCGCu -3'
miRNA:   3'- -CGUGGGCc------GCGC------------UCCGGGA-CCACGCG- -5'
13995 3' -64 NC_003521.1 + 206432 0.76 0.197569
Target:  5'- uCACCUGGCcCGAGcGCCaccaccugCUGGUGCGCa -3'
miRNA:   3'- cGUGGGCCGcGCUC-CGG--------GACCACGCG- -5'
13995 3' -64 NC_003521.1 + 102960 0.75 0.216331
Target:  5'- gGCGCUCgGGCGuCGGGGCUCUGGcgGgGCg -3'
miRNA:   3'- -CGUGGG-CCGC-GCUCCGGGACCa-CgCG- -5'
13995 3' -64 NC_003521.1 + 184158 0.75 0.229842
Target:  5'- uGCgACCUGguGCGCGAgcgggaggugcaccGGCCCgUGGUGCGCu -3'
miRNA:   3'- -CG-UGGGC--CGCGCU--------------CCGGG-ACCACGCG- -5'
13995 3' -64 NC_003521.1 + 131323 0.74 0.258433
Target:  5'- aGCGgCCGGCGCGAccacucgcugGaGCgCCUGGcGCGCa -3'
miRNA:   3'- -CGUgGGCCGCGCU----------C-CG-GGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 125406 0.73 0.300562
Target:  5'- cGCGCCgCGGCGCugaguccgGAGGCCgUGGcgGcCGCc -3'
miRNA:   3'- -CGUGG-GCCGCG--------CUCCGGgACCa-C-GCG- -5'
13995 3' -64 NC_003521.1 + 117716 0.74 0.264143
Target:  5'- aGCgGCCCGGCGagGAcGGUCUggaGGUGCGCg -3'
miRNA:   3'- -CG-UGGGCCGCg-CU-CCGGGa--CCACGCG- -5'
13995 3' -64 NC_003521.1 + 169915 0.74 0.252824
Target:  5'- gGCGCUgacggcucugaCGGCGCugcuGGCCCUGGUGUGg -3'
miRNA:   3'- -CGUGG-----------GCCGCGcu--CCGGGACCACGCg -5'
13995 3' -64 NC_003521.1 + 164297 0.79 0.132921
Target:  5'- gGCugaCGGCGC-AGGCCCUGGUGuCGCg -3'
miRNA:   3'- -CGuggGCCGCGcUCCGGGACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 164843 0.74 0.275869
Target:  5'- gGCGCCCGGCGa-GGGCCgCUccucgucgggGGUGUGUa -3'
miRNA:   3'- -CGUGGGCCGCgcUCCGG-GA----------CCACGCG- -5'
13995 3' -64 NC_003521.1 + 95186 0.76 0.188731
Target:  5'- cGCGCUCGGCGCGGaacuccacgcccGGCaCCgGGUGCGa -3'
miRNA:   3'- -CGUGGGCCGCGCU------------CCG-GGaCCACGCg -5'
13995 3' -64 NC_003521.1 + 183435 0.75 0.247316
Target:  5'- gGCGCUgUGGCGCGAGaucgacGCCCUGGcGCGUc -3'
miRNA:   3'- -CGUGG-GCCGCGCUC------CGGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 17154 0.74 0.281886
Target:  5'- aGCAgC-GGCGCGAGGCCgaGGcgcaGCGCu -3'
miRNA:   3'- -CGUgGgCCGCGCUCCGGgaCCa---CGCG- -5'
13995 3' -64 NC_003521.1 + 92208 0.72 0.350657
Target:  5'- cCGCCCGGcCGCGcgacgagcgcugugaGGGCCCgacGG-GCGCc -3'
miRNA:   3'- cGUGGGCC-GCGC---------------UCCGGGa--CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 87266 0.76 0.193105
Target:  5'- uGUGCgCCGuGCGCGuggccaacGGGCCCgaGGUGCGCg -3'
miRNA:   3'- -CGUG-GGC-CGCGC--------UCCGGGa-CCACGCG- -5'
13995 3' -64 NC_003521.1 + 216353 0.76 0.202122
Target:  5'- cCACCgagGGUGUGAGGCCCgUGGUccGCGCg -3'
miRNA:   3'- cGUGGg--CCGCGCUCCGGG-ACCA--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.