miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 240074 0.69 0.482945
Target:  5'- gGCcUCCGGCGUGGGGCUUgcacgUGGUGgGg -3'
miRNA:   3'- -CGuGGGCCGCGCUCCGGG-----ACCACgCg -5'
13995 3' -64 NC_003521.1 + 234975 0.69 0.518335
Target:  5'- cGCGCCCGGauCGCauaaaaGGGCCCcGGU-CGCc -3'
miRNA:   3'- -CGUGGGCC--GCGc-----UCCGGGaCCAcGCG- -5'
13995 3' -64 NC_003521.1 + 234136 0.67 0.591796
Target:  5'- aGCGCUCGcGgGCGcAGGCCCUGcaGCa- -3'
miRNA:   3'- -CGUGGGC-CgCGC-UCCGGGACcaCGcg -5'
13995 3' -64 NC_003521.1 + 226281 0.66 0.703908
Target:  5'- uGCGCUCGGCcgugGCGuacGaGCCCUcGG-GCGUg -3'
miRNA:   3'- -CGUGGGCCG----CGCu--C-CGGGA-CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 224695 0.68 0.561156
Target:  5'- gGCGCCCgGGCGUGuGgaaguucacgucccGCCCgUGGUGCu- -3'
miRNA:   3'- -CGUGGG-CCGCGCuC--------------CGGG-ACCACGcg -5'
13995 3' -64 NC_003521.1 + 223391 0.66 0.657425
Target:  5'- gGCGCCCcGaCGCG-GGCCgUGuG-GCGCc -3'
miRNA:   3'- -CGUGGGcC-GCGCuCCGGgAC-CaCGCG- -5'
13995 3' -64 NC_003521.1 + 220496 0.69 0.491687
Target:  5'- cCACCCGggagagcagcaGCGUGGuGGCcuCCUGGUGCuGCa -3'
miRNA:   3'- cGUGGGC-----------CGCGCU-CCG--GGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 216353 0.76 0.202122
Target:  5'- cCACCgagGGUGUGAGGCCCgUGGUccGCGCg -3'
miRNA:   3'- cGUGGg--CCGCGCUCCGGG-ACCA--CGCG- -5'
13995 3' -64 NC_003521.1 + 216203 0.72 0.333782
Target:  5'- aGCA-CCGGCGCGGGGUccuCCUGGcacaCGCa -3'
miRNA:   3'- -CGUgGGCCGCGCUCCG---GGACCac--GCG- -5'
13995 3' -64 NC_003521.1 + 214523 0.66 0.657425
Target:  5'- aGCGCggaCaGCGCGuGGCCCUGGccUG-GCc -3'
miRNA:   3'- -CGUGg--GcCGCGCuCCGGGACC--ACgCG- -5'
13995 3' -64 NC_003521.1 + 213396 0.66 0.685419
Target:  5'- -gGCCUGGgcUGCcugGAGGCCUacGUGCGCa -3'
miRNA:   3'- cgUGGGCC--GCG---CUCCGGGacCACGCG- -5'
13995 3' -64 NC_003521.1 + 210866 0.67 0.629276
Target:  5'- ---aCCGGCGUaGGGCCCagGGUGUa- -3'
miRNA:   3'- cgugGGCCGCGcUCCGGGa-CCACGcg -5'
13995 3' -64 NC_003521.1 + 209998 0.76 0.193105
Target:  5'- gGCGCCCGuggaguuCGCGgguuucgccggcGGGCCCUcGGUGCGCu -3'
miRNA:   3'- -CGUGGGCc------GCGC------------UCCGGGA-CCACGCG- -5'
13995 3' -64 NC_003521.1 + 209549 0.71 0.377088
Target:  5'- uGCGCCCGGCgggguggcgGCGAcgguggcgggGGUCCgGGgGCGCa -3'
miRNA:   3'- -CGUGGGCCG---------CGCU----------CCGGGaCCaCGCG- -5'
13995 3' -64 NC_003521.1 + 206515 0.66 0.694685
Target:  5'- cGCuCCCuguacacGCGCGAgccccucacGGCCCUGG-GCGa -3'
miRNA:   3'- -CGuGGGc------CGCGCU---------CCGGGACCaCGCg -5'
13995 3' -64 NC_003521.1 + 206432 0.76 0.197569
Target:  5'- uCACCUGGCcCGAGcGCCaccaccugCUGGUGCGCa -3'
miRNA:   3'- cGUGGGCCGcGCUC-CGG--------GACCACGCG- -5'
13995 3' -64 NC_003521.1 + 206249 0.66 0.676116
Target:  5'- uGCAgCCCGGCGUcAG--CCUGGUGCa- -3'
miRNA:   3'- -CGU-GGGCCGCGcUCcgGGACCACGcg -5'
13995 3' -64 NC_003521.1 + 204526 0.7 0.465691
Target:  5'- aGCGCCCGuaGUugucGcGGUCCgaGGUGCGCa -3'
miRNA:   3'- -CGUGGGCcgCG----CuCCGGGa-CCACGCG- -5'
13995 3' -64 NC_003521.1 + 203989 0.69 0.518335
Target:  5'- cUACCCGGCacagcaGCGccGGCCCgUGGcGCGUg -3'
miRNA:   3'- cGUGGGCCG------CGCu-CCGGG-ACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 202543 0.66 0.703908
Target:  5'- cGCACCUGcuGCGCGccGGCcuCCUGGgGCuGCu -3'
miRNA:   3'- -CGUGGGC--CGCGCu-CCG--GGACCaCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.