Results 1 - 20 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13995 | 3' | -64 | NC_003521.1 | + | 194278 | 1.11 | 0.000724 |
Target: 5'- aGCACCCGGCGCGAGGCCCUGGUGCGCc -3' miRNA: 3'- -CGUGGGCCGCGCUCCGGGACCACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 125787 | 0.8 | 0.115182 |
Target: 5'- gGCAgCCGGCcuGCGAGGCCCaggGGuUGUGCg -3' miRNA: 3'- -CGUgGGCCG--CGCUCCGGGa--CC-ACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 164297 | 0.79 | 0.132921 |
Target: 5'- gGCugaCGGCGC-AGGCCCUGGUGuCGCg -3' miRNA: 3'- -CGuggGCCGCGcUCCGGGACCAC-GCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 74191 | 0.76 | 0.211502 |
Target: 5'- gGCGCCCGGCGCGcGGCCCga---CGCc -3' miRNA: 3'- -CGUGGGCCGCGCuCCGGGaccacGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 209998 | 0.76 | 0.193105 |
Target: 5'- gGCGCCCGuggaguuCGCGgguuucgccggcGGGCCCUcGGUGCGCu -3' miRNA: 3'- -CGUGGGCc------GCGC------------UCCGGGA-CCACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 87266 | 0.76 | 0.193105 |
Target: 5'- uGUGCgCCGuGCGCGuggccaacGGGCCCgaGGUGCGCg -3' miRNA: 3'- -CGUG-GGC-CGCGC--------UCCGGGa-CCACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 95186 | 0.76 | 0.188731 |
Target: 5'- cGCGCUCGGCGCGGaacuccacgcccGGCaCCgGGUGCGa -3' miRNA: 3'- -CGUGGGCCGCGCU------------CCG-GGaCCACGCg -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 206432 | 0.76 | 0.197569 |
Target: 5'- uCACCUGGCcCGAGcGCCaccaccugCUGGUGCGCa -3' miRNA: 3'- cGUGGGCCGcGCUC-CGG--------GACCACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 216353 | 0.76 | 0.202122 |
Target: 5'- cCACCgagGGUGUGAGGCCCgUGGUccGCGCg -3' miRNA: 3'- cGUGGg--CCGCGCUCCGGG-ACCA--CGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 183435 | 0.75 | 0.247316 |
Target: 5'- gGCGCUgUGGCGCGAGaucgacGCCCUGGcGCGUc -3' miRNA: 3'- -CGUGG-GCCGCGCUC------CGGGACCaCGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 184158 | 0.75 | 0.229842 |
Target: 5'- uGCgACCUGguGCGCGAgcgggaggugcaccGGCCCgUGGUGCGCu -3' miRNA: 3'- -CG-UGGGC--CGCGCU--------------CCGGG-ACCACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 102960 | 0.75 | 0.216331 |
Target: 5'- gGCGCUCgGGCGuCGGGGCUCUGGcgGgGCg -3' miRNA: 3'- -CGUGGG-CCGC-GCUCCGGGACCa-CgCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 117716 | 0.74 | 0.264143 |
Target: 5'- aGCgGCCCGGCGagGAcGGUCUggaGGUGCGCg -3' miRNA: 3'- -CG-UGGGCCGCg-CU-CCGGGa--CCACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 131323 | 0.74 | 0.258433 |
Target: 5'- aGCGgCCGGCGCGAccacucgcugGaGCgCCUGGcGCGCa -3' miRNA: 3'- -CGUgGGCCGCGCU----------C-CG-GGACCaCGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 14771 | 0.74 | 0.264143 |
Target: 5'- cGCGCCUucguGGC-CGAGGUgCUGGUGCuGCu -3' miRNA: 3'- -CGUGGG----CCGcGCUCCGgGACCACG-CG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 5833 | 0.74 | 0.264143 |
Target: 5'- gGguCCCGGCGacCGGGGCCCUuuuaugcgauccGG-GCGCg -3' miRNA: 3'- -CguGGGCCGC--GCUCCGGGA------------CCaCGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 169915 | 0.74 | 0.252824 |
Target: 5'- gGCGCUgacggcucugaCGGCGCugcuGGCCCUGGUGUGg -3' miRNA: 3'- -CGUGG-----------GCCGCGcu--CCGGGACCACGCg -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 17154 | 0.74 | 0.281886 |
Target: 5'- aGCAgC-GGCGCGAGGCCgaGGcgcaGCGCu -3' miRNA: 3'- -CGUgGgCCGCGCUCCGGgaCCa---CGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 164843 | 0.74 | 0.275869 |
Target: 5'- gGCGCCCGGCGa-GGGCCgCUccucgucgggGGUGUGUa -3' miRNA: 3'- -CGUGGGCCGCgcUCCGG-GA----------CCACGCG- -5' |
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13995 | 3' | -64 | NC_003521.1 | + | 66645 | 0.74 | 0.275869 |
Target: 5'- cGCACCUGucgaccuucguGCGCGgccugcAGGCCCUGGaGCGUc -3' miRNA: 3'- -CGUGGGC-----------CGCGC------UCCGGGACCaCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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