miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 116609 0.66 0.670518
Target:  5'- cGgGCCCGGuCGCGggccagaaaGGGCCCgcucacccccagccGGcagGCGCa -3'
miRNA:   3'- -CgUGGGCC-GCGC---------UCCGGGa-------------CCa--CGCG- -5'
13995 3' -64 NC_003521.1 + 137240 0.66 0.666782
Target:  5'- cGCGCaCCGGC-CGGGGCCgacGGcgGCaGCg -3'
miRNA:   3'- -CGUG-GGCCGcGCUCCGGga-CCa-CG-CG- -5'
13995 3' -64 NC_003521.1 + 184791 0.66 0.666782
Target:  5'- cGCGCCUGGaCGCccugguGGCCgccuccgaCUGGUGgGUg -3'
miRNA:   3'- -CGUGGGCC-GCGcu----CCGG--------GACCACgCG- -5'
13995 3' -64 NC_003521.1 + 166279 0.66 0.666782
Target:  5'- cGCGCaCGGCGCGGcuGGUCCgcgUGGccucguUGCGUa -3'
miRNA:   3'- -CGUGgGCCGCGCU--CCGGG---ACC------ACGCG- -5'
13995 3' -64 NC_003521.1 + 223391 0.66 0.657425
Target:  5'- gGCGCCCcGaCGCG-GGCCgUGuG-GCGCc -3'
miRNA:   3'- -CGUGGGcC-GCGCuCCGGgAC-CaCGCG- -5'
13995 3' -64 NC_003521.1 + 129919 0.66 0.657425
Target:  5'- cGCGCCUGcuGCGCGAacaccuGGCCgaGacgGCGCa -3'
miRNA:   3'- -CGUGGGC--CGCGCU------CCGGgaCca-CGCG- -5'
13995 3' -64 NC_003521.1 + 12751 0.66 0.657425
Target:  5'- gGCGCCuCGGaCGUGAgcugGGaCCCgcgcGUGCGCc -3'
miRNA:   3'- -CGUGG-GCC-GCGCU----CC-GGGac--CACGCG- -5'
13995 3' -64 NC_003521.1 + 152272 0.66 0.657425
Target:  5'- cCAgCUGGUGCccugccccgagGAGGCCgUuucGGUGCGCc -3'
miRNA:   3'- cGUgGGCCGCG-----------CUCCGGgA---CCACGCG- -5'
13995 3' -64 NC_003521.1 + 15133 0.66 0.657425
Target:  5'- gGCGCCUGGgaGCGccuGGaccccaacGCCUUGGUGCuGCa -3'
miRNA:   3'- -CGUGGGCCg-CGC---UC--------CGGGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 110180 0.66 0.657425
Target:  5'- aGCACaggagguUGGgGUgGAGGCCgCUGGcgUGCGCg -3'
miRNA:   3'- -CGUGg------GCCgCG-CUCCGG-GACC--ACGCG- -5'
13995 3' -64 NC_003521.1 + 214523 0.66 0.657425
Target:  5'- aGCGCggaCaGCGCGuGGCCCUGGccUG-GCc -3'
miRNA:   3'- -CGUGg--GcCGCGCuCCGGGACC--ACgCG- -5'
13995 3' -64 NC_003521.1 + 32356 0.66 0.657425
Target:  5'- cGgAgCCGGCGggaCGGGGCuUUUGGUGgCGCg -3'
miRNA:   3'- -CgUgGGCCGC---GCUCCG-GGACCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 17422 0.66 0.657425
Target:  5'- cGCGCCgGGgCGCcacacGGCCCgcgucgGG-GCGCc -3'
miRNA:   3'- -CGUGGgCC-GCGcu---CCGGGa-----CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 129999 0.67 0.64805
Target:  5'- uGCGCCggcggCGGCGCGcaacGGCCgCUGGcuuucaGCGUc -3'
miRNA:   3'- -CGUGG-----GCCGCGCu---CCGG-GACCa-----CGCG- -5'
13995 3' -64 NC_003521.1 + 137010 0.67 0.64805
Target:  5'- aGCGCgagCUGGC-CGAGGCCC-GG-GCGg -3'
miRNA:   3'- -CGUG---GGCCGcGCUCCGGGaCCaCGCg -5'
13995 3' -64 NC_003521.1 + 132695 0.67 0.64805
Target:  5'- cGCGCCCGGCugGCGGgacgcGGCaCUGGUccaagGCGa -3'
miRNA:   3'- -CGUGGGCCG--CGCU-----CCGgGACCA-----CGCg -5'
13995 3' -64 NC_003521.1 + 177554 0.67 0.64805
Target:  5'- uGCACCCGGuCGcCGAGGaaggaCUcgucaaaggUGGcgGCGCc -3'
miRNA:   3'- -CGUGGGCC-GC-GCUCCg----GG---------ACCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 72025 0.67 0.638665
Target:  5'- uGCGCCgcgUGGCcuGCaccAGGUCCUGGUGCa- -3'
miRNA:   3'- -CGUGG---GCCG--CGc--UCCGGGACCACGcg -5'
13995 3' -64 NC_003521.1 + 91668 0.67 0.638665
Target:  5'- gGCucCCUGGCGCauuccgcagcGGGCuCCUGG-GCGUg -3'
miRNA:   3'- -CGu-GGGCCGCGc---------UCCG-GGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 22363 0.67 0.638665
Target:  5'- uGCGCCCacGGCGUGGugccGGCCauguccuccgUGGUGcCGCc -3'
miRNA:   3'- -CGUGGG--CCGCGCU----CCGGg---------ACCAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.