miRNA display CGI


Results 21 - 40 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 126408 0.66 0.694685
Target:  5'- -aGCCCGG-GUGgauguGGGCCUUGGUcUGCa -3'
miRNA:   3'- cgUGGGCCgCGC-----UCCGGGACCAcGCG- -5'
13995 3' -64 NC_003521.1 + 109388 0.66 0.694685
Target:  5'- -gGCCaGGuCGCGgaAGGCgCUcagGGUGCGCg -3'
miRNA:   3'- cgUGGgCC-GCGC--UCCGgGA---CCACGCG- -5'
13995 3' -64 NC_003521.1 + 128368 0.66 0.69376
Target:  5'- cCGCCgGGCGCGcccaccaGGGCcgCCUGG-GcCGCc -3'
miRNA:   3'- cGUGGgCCGCGC-------UCCG--GGACCaC-GCG- -5'
13995 3' -64 NC_003521.1 + 10491 0.66 0.69376
Target:  5'- aGCAUgcgCCGGCggggaugGCGuGGCCCcccaGGcgGCGCg -3'
miRNA:   3'- -CGUG---GGCCG-------CGCuCCGGGa---CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 69078 0.66 0.69376
Target:  5'- -gACCCgugucaugaugguGGCGUGGuGGUaCUUGGUGUGCa -3'
miRNA:   3'- cgUGGG-------------CCGCGCU-CCG-GGACCACGCG- -5'
13995 3' -64 NC_003521.1 + 100183 0.66 0.685419
Target:  5'- gGCGCCaGGCGC-AGGCUCUcGGccGUGUa -3'
miRNA:   3'- -CGUGGgCCGCGcUCCGGGA-CCa-CGCG- -5'
13995 3' -64 NC_003521.1 + 213396 0.66 0.685419
Target:  5'- -gGCCUGGgcUGCcugGAGGCCUacGUGCGCa -3'
miRNA:   3'- cgUGGGCC--GCG---CUCCGGGacCACGCG- -5'
13995 3' -64 NC_003521.1 + 181393 0.66 0.685419
Target:  5'- cGCugCCGGCgGCGGcGCCgCUGucGCGUg -3'
miRNA:   3'- -CGugGGCCG-CGCUcCGG-GACcaCGCG- -5'
13995 3' -64 NC_003521.1 + 180670 0.66 0.685419
Target:  5'- -gGCgUUGGCGCGAGGCCUgcGUGCu- -3'
miRNA:   3'- cgUG-GGCCGCGCUCCGGGacCACGcg -5'
13995 3' -64 NC_003521.1 + 80975 0.66 0.68449
Target:  5'- -gACggGGCGCGAguagcagcGGCCCuucuccuUGGUGUGCa -3'
miRNA:   3'- cgUGggCCGCGCU--------CCGGG-------ACCACGCG- -5'
13995 3' -64 NC_003521.1 + 193590 0.66 0.68449
Target:  5'- uCACCCGGuCGCGGuuuucGCCCcuUGGUcgguguguugcccGCGCu -3'
miRNA:   3'- cGUGGGCC-GCGCUc----CGGG--ACCA-------------CGCG- -5'
13995 3' -64 NC_003521.1 + 181781 0.66 0.676116
Target:  5'- aGCGCCCGGUagucGCGA--UCCUcGUGCGUc -3'
miRNA:   3'- -CGUGGGCCG----CGCUccGGGAcCACGCG- -5'
13995 3' -64 NC_003521.1 + 111179 0.66 0.676116
Target:  5'- cGC-CCCGGCGaCGGcGCCgCggacGGUGgGCu -3'
miRNA:   3'- -CGuGGGCCGC-GCUcCGG-Ga---CCACgCG- -5'
13995 3' -64 NC_003521.1 + 87783 0.66 0.676116
Target:  5'- aGgGCCaGGUGCuGAGGCCCgua-GCGCu -3'
miRNA:   3'- -CgUGGgCCGCG-CUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 91993 0.66 0.676116
Target:  5'- cGCACCuCGGC-CGAGGgCaggcGGUcgccGCGCa -3'
miRNA:   3'- -CGUGG-GCCGcGCUCCgGga--CCA----CGCG- -5'
13995 3' -64 NC_003521.1 + 177389 0.66 0.676116
Target:  5'- uGCAUCUuGCGCagguuGAGuCCgUGGUGCGCc -3'
miRNA:   3'- -CGUGGGcCGCG-----CUCcGGgACCACGCG- -5'
13995 3' -64 NC_003521.1 + 206249 0.66 0.676116
Target:  5'- uGCAgCCCGGCGUcAG--CCUGGUGCa- -3'
miRNA:   3'- -CGU-GGGCCGCGcUCcgGGACCACGcg -5'
13995 3' -64 NC_003521.1 + 161483 0.66 0.676116
Target:  5'- cGUGUCCuuuGCGCGAGaCCCUGGUGgGUc -3'
miRNA:   3'- -CGUGGGc--CGCGCUCcGGGACCACgCG- -5'
13995 3' -64 NC_003521.1 + 197597 0.66 0.676116
Target:  5'- cGCGCCCaaUGUGcGGCgUCUGGUGCaGCa -3'
miRNA:   3'- -CGUGGGccGCGCuCCG-GGACCACG-CG- -5'
13995 3' -64 NC_003521.1 + 134921 0.66 0.675183
Target:  5'- gGCGCCCGGCaUGAacauguuGGCCgUcuUGCGCa -3'
miRNA:   3'- -CGUGGGCCGcGCU-------CCGGgAccACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.