Results 41 - 60 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 6048 | 0.66 | 0.978518 |
Target: 5'- gCCGUGccCCAGCgGCCCCGcaGGGcguGAUCa -3' miRNA: 3'- -GGCACacGGUCG-UGGGGU--UCUu--CUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 138616 | 0.67 | 0.965105 |
Target: 5'- -gGUGUGCCAgGUAgUCUcGGAAGACg -3' miRNA: 3'- ggCACACGGU-CGUgGGGuUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 115120 | 0.67 | 0.964788 |
Target: 5'- gUCGUGaccGCCGGCGuCUCCAcuacgucGGAcaAGGCCa -3' miRNA: 3'- -GGCACa--CGGUCGU-GGGGU-------UCU--UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 206545 | 0.67 | 0.961842 |
Target: 5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3' miRNA: 3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 236576 | 0.67 | 0.971034 |
Target: 5'- gCCGUGUGCCaucucacggcAGCcaGCCUCGGGGcuccGACa -3' miRNA: 3'- -GGCACACGG----------UCG--UGGGGUUCUu---CUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 87727 | 0.67 | 0.965105 |
Target: 5'- cCCGguugagGUGCCAGacgaAgCCCGAGAccagcugcGGACa -3' miRNA: 3'- -GGCa-----CACGGUCg---UgGGGUUCU--------UCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 133337 | 0.67 | 0.965105 |
Target: 5'- aCCaGUGUGCUcugGGCGCCggaCGuGGAGAUCa -3' miRNA: 3'- -GG-CACACGG---UCGUGGg--GUuCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 149658 | 0.67 | 0.965105 |
Target: 5'- cCUG-GUGCgGGCugCCCGAcaucguGGGCCc -3' miRNA: 3'- -GGCaCACGgUCGugGGGUUcu----UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 167458 | 0.67 | 0.965105 |
Target: 5'- cCCGUG-GUCAG-AUCCgagaGGGAAGGCCu -3' miRNA: 3'- -GGCACaCGGUCgUGGGg---UUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 164653 | 0.67 | 0.966354 |
Target: 5'- cCCGUGUGUCaaaucaaaccuacguGGUgaACCCCGuGAcgacgAGGCCg -3' miRNA: 3'- -GGCACACGG---------------UCG--UGGGGUuCU-----UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 80144 | 0.67 | 0.961842 |
Target: 5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3' miRNA: 3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 148980 | 0.67 | 0.961842 |
Target: 5'- uCCGcGUGCUGGCGCgcaccuucacgCCCGuccAGAuccAGACCg -3' miRNA: 3'- -GGCaCACGGUCGUG-----------GGGU---UCU---UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 94630 | 0.67 | 0.968168 |
Target: 5'- cCCGUGagacgaugaUGCCAGCucgaUCCGGGAccGCCg -3' miRNA: 3'- -GGCAC---------ACGGUCGug--GGGUUCUucUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 421 | 0.67 | 0.971034 |
Target: 5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3' miRNA: 3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 215506 | 0.67 | 0.971034 |
Target: 5'- ---cGUGCCGGcCACCU--GGAAGACg -3' miRNA: 3'- ggcaCACGGUC-GUGGGguUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 24615 | 0.67 | 0.954692 |
Target: 5'- gCGUGUGCCAGgaggACCCCGcgccGGugCu -3' miRNA: 3'- gGCACACGGUCg---UGGGGUucu-UCugG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 85768 | 0.67 | 0.968168 |
Target: 5'- -gGUG-GCCAGCGCCUCGcAGccGuCCa -3' miRNA: 3'- ggCACaCGGUCGUGGGGU-UCuuCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 50291 | 0.67 | 0.968168 |
Target: 5'- gCCGcUGcUGCCGccGCACCucgcuccucagCCAGGGAGGCa -3' miRNA: 3'- -GGC-AC-ACGGU--CGUGG-----------GGUUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 111720 | 0.67 | 0.961842 |
Target: 5'- uCCGUGcGCCGGCACgCCAcccacaGCCu -3' miRNA: 3'- -GGCACaCGGUCGUGgGGUucuuc-UGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 136589 | 0.67 | 0.961842 |
Target: 5'- cCUG-GUGCUcgaucacucGGCACUCUcgugcGAGGAGGCCg -3' miRNA: 3'- -GGCaCACGG---------UCGUGGGG-----UUCUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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