miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 135909 0.66 0.982642
Target:  5'- cCCGUcuuuGUGCCGGCcucggccacgGCCgCGGGAuGugCg -3'
miRNA:   3'- -GGCA----CACGGUCG----------UGGgGUUCUuCugG- -5'
13995 5' -54.9 NC_003521.1 + 6048 0.66 0.978518
Target:  5'- gCCGUGccCCAGCgGCCCCGcaGGGcguGAUCa -3'
miRNA:   3'- -GGCACacGGUCG-UGGGGU--UCUu--CUGG- -5'
13995 5' -54.9 NC_003521.1 + 101226 0.66 0.975962
Target:  5'- aCCGUguuccugGUGCCgcGGCGCCaCGGcAAGACCu -3'
miRNA:   3'- -GGCA-------CACGG--UCGUGGgGUUcUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 215122 0.66 0.980662
Target:  5'- gCGUGU-UCGGUACCagccaCGAGggGGCUu -3'
miRNA:   3'- gGCACAcGGUCGUGGg----GUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111759 0.66 0.977842
Target:  5'- aCGUGgagGCCAugcacaggugcugcGCGCgCUCAAGAAcacGGCCg -3'
miRNA:   3'- gGCACa--CGGU--------------CGUG-GGGUUCUU---CUGG- -5'
13995 5' -54.9 NC_003521.1 + 31770 0.66 0.978518
Target:  5'- aUCGggGUcgcGCCAGuCGCCgCAcucgcAGAAGGCCg -3'
miRNA:   3'- -GGCa-CA---CGGUC-GUGGgGU-----UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 169595 0.66 0.982642
Target:  5'- uCUGUGcUGUCAGUGCCgCGguuguAGggGACg -3'
miRNA:   3'- -GGCAC-ACGGUCGUGGgGU-----UCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 92682 0.66 0.979396
Target:  5'- cUCGgcgagGUGCCGGguCCCUggGAcacgaugaggucccaGGAUCc -3'
miRNA:   3'- -GGCa----CACGGUCguGGGGuuCU---------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111031 0.66 0.982642
Target:  5'- aCGgcu-UCAGCGCCCCAGGc-GACCc -3'
miRNA:   3'- gGCacacGGUCGUGGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 100856 0.66 0.978518
Target:  5'- -gGUGUuCCacgAGCGCCUCAAGAGcGCCc -3'
miRNA:   3'- ggCACAcGG---UCGUGGGGUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 149430 0.66 0.978518
Target:  5'- -aGUGcUGUCuGCugCUCAAGucGGCCu -3'
miRNA:   3'- ggCAC-ACGGuCGugGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 194391 0.66 0.980662
Target:  5'- cCCGcagccccGCCGGaUACCCUcgcacGAGGAGGCCg -3'
miRNA:   3'- -GGCaca----CGGUC-GUGGGG-----UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 68062 0.66 0.978518
Target:  5'- cCCG-GUGgCAGCcagaaugccggGCCCCGcaagaAGAAGAgCa -3'
miRNA:   3'- -GGCaCACgGUCG-----------UGGGGU-----UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 184411 0.66 0.973711
Target:  5'- aCCGcgaGUaCCGGCGCUgCGAGGAGuCCu -3'
miRNA:   3'- -GGCa--CAcGGUCGUGGgGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 72635 0.66 0.982642
Target:  5'- aCCGUGcuggcggGCCAGCAgCUCAucacGcAGACUa -3'
miRNA:   3'- -GGCACa------CGGUCGUgGGGUu---CuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 117037 0.66 0.982642
Target:  5'- aCGUcaagGCCAGUguuuCgCCCGAGgcGGCCg -3'
miRNA:   3'- gGCAca--CGGUCGu---G-GGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 4225 0.66 0.976204
Target:  5'- -----aGCCGGC-CCCgGgaGGAGGACCg -3'
miRNA:   3'- ggcacaCGGUCGuGGGgU--UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 44276 0.66 0.980662
Target:  5'- gCUGUGgGUCGGCuuucucCCCCGGGAgcuGGGCg -3'
miRNA:   3'- -GGCACaCGGUCGu-----GGGGUUCU---UCUGg -5'
13995 5' -54.9 NC_003521.1 + 183246 0.66 0.982642
Target:  5'- uUCGcc-GCCGGCGCCCUc-GAAGGCg -3'
miRNA:   3'- -GGCacaCGGUCGUGGGGuuCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 207254 0.66 0.982642
Target:  5'- uCCGUGccGUuaCGGCACUCCGAGAcu-CCg -3'
miRNA:   3'- -GGCACa-CG--GUCGUGGGGUUCUucuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.