miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 25753 0.67 0.968168
Target:  5'- aCGaUGUGUCcgGGCACCaCCAGGcAGcCCa -3'
miRNA:   3'- gGC-ACACGG--UCGUGG-GGUUCuUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 31770 0.66 0.978518
Target:  5'- aUCGggGUcgcGCCAGuCGCCgCAcucgcAGAAGGCCg -3'
miRNA:   3'- -GGCa-CA---CGGUC-GUGGgGU-----UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 33476 0.68 0.950798
Target:  5'- gCCGgccGcGCCGacccgagggacGCGCCCCccGAAGACCu -3'
miRNA:   3'- -GGCa--CaCGGU-----------CGUGGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 35473 0.68 0.937801
Target:  5'- gUCGUGcacgGCgCAGCugccGCCgCCGAGGAGGCg -3'
miRNA:   3'- -GGCACa---CG-GUCG----UGG-GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 36213 0.68 0.950798
Target:  5'- aCGcUGUcGCCAcauGgACCCCGAGcAGGACUa -3'
miRNA:   3'- gGC-ACA-CGGU---CgUGGGGUUC-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 37434 0.67 0.965105
Target:  5'- gCGUG-GCCGGgACCUgAGGc-GACCg -3'
miRNA:   3'- gGCACaCGGUCgUGGGgUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 37479 0.68 0.946686
Target:  5'- aCCGUGgUGCCgcagGGCACCCCcauc--GCCa -3'
miRNA:   3'- -GGCAC-ACGG----UCGUGGGGuucuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 38259 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 39605 0.67 0.954692
Target:  5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3'
miRNA:   3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 40743 0.67 0.971034
Target:  5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3'
miRNA:   3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 40826 0.68 0.932532
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 44276 0.66 0.980662
Target:  5'- gCUGUGgGUCGGCuuucucCCCCGGGAgcuGGGCg -3'
miRNA:   3'- -GGCACaCGGUCGu-----GGGGUUCU---UCUGg -5'
13995 5' -54.9 NC_003521.1 + 44742 0.68 0.950798
Target:  5'- uUCGUGcUGCUGG-ACgCCGAGAcGGACCg -3'
miRNA:   3'- -GGCAC-ACGGUCgUGgGGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 50291 0.67 0.968168
Target:  5'- gCCGcUGcUGCCGccGCACCucgcuccucagCCAGGGAGGCa -3'
miRNA:   3'- -GGC-AC-ACGGU--CGUGG-----------GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 53578 0.76 0.5907
Target:  5'- aUCGUGUcGCCGGCACCCaugcuGguGGCCg -3'
miRNA:   3'- -GGCACA-CGGUCGUGGGguu--CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 55957 0.68 0.949587
Target:  5'- aCCGUGUGCa---GCCCCAccacgccgaugugcAGggG-CCg -3'
miRNA:   3'- -GGCACACGgucgUGGGGU--------------UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 57614 0.68 0.950798
Target:  5'- ---cGUGCCGucGCGCUCCAGGcacgucacgGGGGCCg -3'
miRNA:   3'- ggcaCACGGU--CGUGGGGUUC---------UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 59557 0.66 0.980455
Target:  5'- cCCGcGU-CCGGCGCCgcggggguuucguCCGAGAAGcgcGCCa -3'
miRNA:   3'- -GGCaCAcGGUCGUGG-------------GGUUCUUC---UGG- -5'
13995 5' -54.9 NC_003521.1 + 59606 0.67 0.958372
Target:  5'- aCGguaGUGgCGGCgGCCCCGGcGgcGACCg -3'
miRNA:   3'- gGCa--CACgGUCG-UGGGGUU-CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 62858 0.66 0.975962
Target:  5'- -gGUGUGCCccgccucAGCAUCCCucccGGuaccGACCg -3'
miRNA:   3'- ggCACACGG-------UCGUGGGGu---UCuu--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.