miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 421 0.67 0.971034
Target:  5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3'
miRNA:   3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 504 0.68 0.932533
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 681 0.67 0.958372
Target:  5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3'
miRNA:   3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 765 0.66 0.973711
Target:  5'- gCCGgagGCCaagcaGGCGCCaUCGgcGGAGGACCg -3'
miRNA:   3'- -GGCacaCGG-----UCGUGG-GGU--UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 2250 0.7 0.893297
Target:  5'- gCUGgGUGCCGucuucggcuacuGC-CCCCAGGAcGGCCa -3'
miRNA:   3'- -GGCaCACGGU------------CGuGGGGUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 3400 0.73 0.766028
Target:  5'- cCCGac-GCCGGCAUCCgGGGAugGGGCCa -3'
miRNA:   3'- -GGCacaCGGUCGUGGGgUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 4225 0.66 0.976204
Target:  5'- -----aGCCGGC-CCCgGgaGGAGGACCg -3'
miRNA:   3'- ggcacaCGGUCGuGGGgU--UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 6048 0.66 0.978518
Target:  5'- gCCGUGccCCAGCgGCCCCGcaGGGcguGAUCa -3'
miRNA:   3'- -GGCACacGGUCG-UGGGGU--UCUu--CUGG- -5'
13995 5' -54.9 NC_003521.1 + 7199 0.69 0.922792
Target:  5'- gCCGcUGaaauUGCCcucgAGCACCCCGccGGAGAUCa -3'
miRNA:   3'- -GGC-AC----ACGG----UCGUGGGGUu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 11834 0.67 0.956189
Target:  5'- uCCGUGcUGCCGGUccugcgccGCCCgCGcaccuccucggacgaGGAGGACUc -3'
miRNA:   3'- -GGCAC-ACGGUCG--------UGGG-GU---------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 11943 0.69 0.922792
Target:  5'- gCCGUGUuuuGUguGUAUCCCAAGucaGAGAgCCg -3'
miRNA:   3'- -GGCACA---CGguCGUGGGGUUC---UUCU-GG- -5'
13995 5' -54.9 NC_003521.1 + 13941 0.68 0.942354
Target:  5'- gCCGUGgUGCCcccgcAGCugCCCucgcuGGAgcccugauGGGCCu -3'
miRNA:   3'- -GGCAC-ACGG-----UCGugGGGu----UCU--------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 14060 0.66 0.980662
Target:  5'- --aUGUGCCuGgAUCCCcuGGAGAUCa -3'
miRNA:   3'- ggcACACGGuCgUGGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 14967 0.71 0.835177
Target:  5'- aCCGcaccUGUGCCcGCACCaCCAcGAgcgcgccguGGACCa -3'
miRNA:   3'- -GGC----ACACGGuCGUGG-GGUuCU---------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 17358 0.72 0.78415
Target:  5'- gCCGUGacGCCGGCGCggcggcccagaCUCGAGAgGGACCg -3'
miRNA:   3'- -GGCACa-CGGUCGUG-----------GGGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 20289 0.68 0.946686
Target:  5'- gCgGUGgaucucGCCGGCGCCaugcagcaCCAGGAGG-CCa -3'
miRNA:   3'- -GgCACa-----CGGUCGUGG--------GGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 21551 0.68 0.942354
Target:  5'- cCCGcucaUGUGCCAGC-CCCU--GcGGGCCc -3'
miRNA:   3'- -GGC----ACACGGUCGuGGGGuuCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 23002 0.66 0.978518
Target:  5'- aCG-GUGauagCGGCA-UCCGAGGAGGCCa -3'
miRNA:   3'- gGCaCACg---GUCGUgGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 24615 0.67 0.954692
Target:  5'- gCGUGUGCCAGgaggACCCCGcgccGGugCu -3'
miRNA:   3'- gGCACACGGUCg---UGGGGUucu-UCugG- -5'
13995 5' -54.9 NC_003521.1 + 25383 0.67 0.954692
Target:  5'- cCUG-GcGCCAGCACCCgCGgcucugcuucacGGAGGGCUc -3'
miRNA:   3'- -GGCaCaCGGUCGUGGG-GU------------UCUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.