miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 104200 0.69 0.91108
Target:  5'- cCCGUG-GCCGauuacgugcugcuGCAgCCCAGcGAGGACg -3'
miRNA:   3'- -GGCACaCGGU-------------CGUgGGGUU-CUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 134611 0.7 0.865819
Target:  5'- aUGUGcGCCGcGCACUCgGAGAuGGCCa -3'
miRNA:   3'- gGCACaCGGU-CGUGGGgUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 238487 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 110128 0.7 0.893297
Target:  5'- cCCGUuuuucaGUGCUuucacggcGUACCCguGGAAGGCCg -3'
miRNA:   3'- -GGCA------CACGGu-------CGUGGGguUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 115740 0.7 0.893297
Target:  5'- gCCGUugcggGCCAGguCCUCGgggaagggaucAGAAGGCCg -3'
miRNA:   3'- -GGCAca---CGGUCguGGGGU-----------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 202478 0.7 0.893297
Target:  5'- gCUGgGUGCCGucuucggcuacuGC-CCCCAGGAcGGCCa -3'
miRNA:   3'- -GGCaCACGGU------------CGuGGGGUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 73569 0.69 0.899638
Target:  5'- gCCGUGgUGCgGGCGCUggUCAugaacGAGGACCu -3'
miRNA:   3'- -GGCAC-ACGgUCGUGG--GGUu----CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 75241 0.69 0.90576
Target:  5'- ---cGUGCCcuucauGCACgCCgAGGAGGGCCg -3'
miRNA:   3'- ggcaCACGGu-----CGUG-GGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148434 0.69 0.90576
Target:  5'- gCCGc--GCCGGCgGCUCCAGGGGuGGCCg -3'
miRNA:   3'- -GGCacaCGGUCG-UGGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 129068 0.71 0.850872
Target:  5'- aCCGUGUGCaUGGC-CUCCAcguuGAGGAUCu -3'
miRNA:   3'- -GGCACACG-GUCGuGGGGUu---CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 194080 0.71 0.835177
Target:  5'- ---aGUuCCAGCACCCCGAGAGucCCu -3'
miRNA:   3'- ggcaCAcGGUCGUGGGGUUCUUcuGG- -5'
13995 5' -54.9 NC_003521.1 + 203168 0.71 0.818787
Target:  5'- cCCGUcGUGCCGGCagaaugccACCaCCAGauguucaccgccGGAGGCCa -3'
miRNA:   3'- -GGCA-CACGGUCG--------UGG-GGUU------------CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 105051 0.75 0.640293
Target:  5'- cCCGUGcGCgAGCAgCCCCAGGGGcGAUCc -3'
miRNA:   3'- -GGCACaCGgUCGU-GGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 85486 0.75 0.660138
Target:  5'- gCCG-GUGCCcGCGCCCCcgccGGGACCc -3'
miRNA:   3'- -GGCaCACGGuCGUGGGGuuc-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 102705 0.74 0.709238
Target:  5'- gCG-GUGCCAGguCUCgGAGAAGACg -3'
miRNA:   3'- gGCaCACGGUCguGGGgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 77624 0.73 0.718907
Target:  5'- cCCGUGa--CGGCGCCggCCGAGAGGAUCg -3'
miRNA:   3'- -GGCACacgGUCGUGG--GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 3400 0.73 0.766028
Target:  5'- cCCGac-GCCGGCAUCCgGGGAugGGGCCa -3'
miRNA:   3'- -GGCacaCGGUCGUGGGgUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 63680 0.72 0.77515
Target:  5'- uUCGUGUGUCuGCGgCCCuccgacuucAAGAAGAUCa -3'
miRNA:   3'- -GGCACACGGuCGUgGGG---------UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 215445 0.72 0.810349
Target:  5'- gCCGcggGUGCUGGCGCCaggCCGAGGGaGCCa -3'
miRNA:   3'- -GGCa--CACGGUCGUGG---GGUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 151572 0.71 0.816272
Target:  5'- cUCGUGUcaccgcGUCAGCACgCCCGauggggaaaucuugGGAGGGCCc -3'
miRNA:   3'- -GGCACA------CGGUCGUG-GGGU--------------UCUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.