miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 194317 1.13 0.003609
Target:  5'- cCCGUGUGCCAGCACCCCAAGAAGACCc -3'
miRNA:   3'- -GGCACACGGUCGUGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 112486 0.71 0.818787
Target:  5'- cCCGUGgGCCuGUACCUgcccGAGGACCg -3'
miRNA:   3'- -GGCACaCGGuCGUGGGguu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 138235 0.71 0.827066
Target:  5'- aCGUG-GCCAGCgccaGCCCCGAGAcgcAGuuCu -3'
miRNA:   3'- gGCACaCGGUCG----UGGGGUUCU---UCugG- -5'
13995 5' -54.9 NC_003521.1 + 72635 0.66 0.982642
Target:  5'- aCCGUGcuggcggGCCAGCAgCUCAucacGcAGACUa -3'
miRNA:   3'- -GGCACa------CGGUCGUgGGGUu---CuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 77726 0.76 0.580841
Target:  5'- gUCGUGgcGCUGGCGCCCgAGGAcGGGCCg -3'
miRNA:   3'- -GGCACa-CGGUCGUGGGgUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 53578 0.76 0.5907
Target:  5'- aUCGUGUcGCCGGCACCCaugcuGguGGCCg -3'
miRNA:   3'- -GGCACA-CGGUCGUGGGguu--CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 184365 0.73 0.718906
Target:  5'- gCCGUG-GCgCGGCGCCUCucGGAccuGGGCCa -3'
miRNA:   3'- -GGCACaCG-GUCGUGGGGu-UCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 208414 0.73 0.725633
Target:  5'- gCCGUGcGCCAcgggcugcugugucGCACgCCCGAGGAccuGGCCa -3'
miRNA:   3'- -GGCACaCGGU--------------CGUG-GGGUUCUU---CUGG- -5'
13995 5' -54.9 NC_003521.1 + 94190 0.72 0.775149
Target:  5'- gUCGUG-GCCGGgGCCCUu-GAAGACg -3'
miRNA:   3'- -GGCACaCGGUCgUGGGGuuCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 141802 0.71 0.818787
Target:  5'- cCCGga-GCCGGCGCCaucgucuaCAAGAcGACCg -3'
miRNA:   3'- -GGCacaCGGUCGUGGg-------GUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 172003 0.72 0.801758
Target:  5'- aCCGacUGUGCCAGgGCCCgCAAGucuauccGGACg -3'
miRNA:   3'- -GGC--ACACGGUCgUGGG-GUUCu------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 111279 0.73 0.766028
Target:  5'- cCCGccGUGCCAGCGCCgCCGcgauGGAGaACUg -3'
miRNA:   3'- -GGCa-CACGGUCGUGG-GGUu---CUUC-UGG- -5'
13995 5' -54.9 NC_003521.1 + 152267 0.8 0.365387
Target:  5'- gCGg--GCCAGCuggugcccuGCCCCGAGGAGGCCg -3'
miRNA:   3'- gGCacaCGGUCG---------UGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 205744 0.72 0.810348
Target:  5'- uCCGgcaUGUCgAGCGCCCgGAgGAAGACCu -3'
miRNA:   3'- -GGCac-ACGG-UCGUGGGgUU-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152094 0.77 0.503685
Target:  5'- aCGUGcGCCGGCuCUgCGAGGAGACCc -3'
miRNA:   3'- gGCACaCGGUCGuGGgGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 164833 0.73 0.728504
Target:  5'- aCGUGcUGaCGGCGCCCgGcGAGGGCCg -3'
miRNA:   3'- gGCAC-ACgGUCGUGGGgUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 169520 0.72 0.810348
Target:  5'- gCCGccccagGUGCUGGUGCCCCAGG--GGCCc -3'
miRNA:   3'- -GGCa-----CACGGUCGUGGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 87458 0.71 0.827066
Target:  5'- aCGggcUGUGCCGGCACC---AGAAGAUCu -3'
miRNA:   3'- gGC---ACACGGUCGUGGgguUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 205585 0.76 0.561231
Target:  5'- aCCuUGUGCCGucucGCGCCCCGAGGAcgcucgauccGACCc -3'
miRNA:   3'- -GGcACACGGU----CGUGGGGUUCUU----------CUGG- -5'
13995 5' -54.9 NC_003521.1 + 130178 0.75 0.620424
Target:  5'- gCCGUgaccGUGCCGGCGCCCggCGAGAu-GCCg -3'
miRNA:   3'- -GGCA----CACGGUCGUGGG--GUUCUucUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.