miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 121068 0.66 0.978518
Target:  5'- -gGUGUGCUGGUACUCCAGcuu-GCCg -3'
miRNA:   3'- ggCACACGGUCGUGGGGUUcuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 59557 0.66 0.980455
Target:  5'- cCCGcGU-CCGGCGCCgcggggguuucguCCGAGAAGcgcGCCa -3'
miRNA:   3'- -GGCaCAcGGUCGUGG-------------GGUUCUUC---UGG- -5'
13995 5' -54.9 NC_003521.1 + 72635 0.66 0.982642
Target:  5'- aCCGUGcuggcggGCCAGCAgCUCAucacGcAGACUa -3'
miRNA:   3'- -GGCACa------CGGUCGUgGGGUu---CuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 222169 0.66 0.978518
Target:  5'- cCCGUG-GCCAGCagguccgugcgGCCCCAc----GCCa -3'
miRNA:   3'- -GGCACaCGGUCG-----------UGGGGUucuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 219272 0.66 0.973711
Target:  5'- cCCGcagGgGCUGGCACaugagcgggCCCAuGAAGGCCa -3'
miRNA:   3'- -GGCa--CaCGGUCGUG---------GGGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 105258 0.66 0.973711
Target:  5'- aCgGUGUGaCGGCACCCaAAGAcaaACCg -3'
miRNA:   3'- -GgCACACgGUCGUGGGgUUCUuc-UGG- -5'
13995 5' -54.9 NC_003521.1 + 169776 0.66 0.976204
Target:  5'- -gGUGUGCaCGGUACgCCA--GAGGCUg -3'
miRNA:   3'- ggCACACG-GUCGUGgGGUucUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 90020 0.66 0.976204
Target:  5'- uUCG-GU-CCAGCGCCCCcuGgcGGCUc -3'
miRNA:   3'- -GGCaCAcGGUCGUGGGGuuCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 31770 0.66 0.978518
Target:  5'- aUCGggGUcgcGCCAGuCGCCgCAcucgcAGAAGGCCg -3'
miRNA:   3'- -GGCa-CA---CGGUC-GUGGgGU-----UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 62858 0.66 0.975962
Target:  5'- -gGUGUGCCccgccucAGCAUCCCucccGGuaccGACCg -3'
miRNA:   3'- ggCACACGG-------UCGUGGGGu---UCuu--CUGG- -5'
13995 5' -54.9 NC_003521.1 + 92682 0.66 0.979396
Target:  5'- cUCGgcgagGUGCCGGguCCCUggGAcacgaugaggucccaGGAUCc -3'
miRNA:   3'- -GGCa----CACGGUCguGGGGuuCU---------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 200992 0.66 0.973711
Target:  5'- gCCGgagGCCaagcaGGCGCCaUCGgcGGAGGACCg -3'
miRNA:   3'- -GGCacaCGG-----UCGUGG-GGU--UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 23002 0.66 0.978518
Target:  5'- aCG-GUGauagCGGCA-UCCGAGGAGGCCa -3'
miRNA:   3'- gGCaCACg---GUCGUgGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 113057 0.66 0.973711
Target:  5'- gCCGUGcuCCAGCACCuuCCGGGcuacGAGGCg -3'
miRNA:   3'- -GGCACacGGUCGUGG--GGUUC----UUCUGg -5'
13995 5' -54.9 NC_003521.1 + 212482 0.66 0.973711
Target:  5'- cCCGUG-GCCcacacGCACauggCCGAcGAGACCa -3'
miRNA:   3'- -GGCACaCGGu----CGUGg---GGUUcUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 64747 0.66 0.975475
Target:  5'- gCCGUGgccaagacgccgGCCGGCGCggcaccgggcgauCCCAAGcgccugcAGACCc -3'
miRNA:   3'- -GGCACa-----------CGGUCGUG-------------GGGUUCu------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 4225 0.66 0.976204
Target:  5'- -----aGCCGGC-CCCgGgaGGAGGACCg -3'
miRNA:   3'- ggcacaCGGUCGuGGGgU--UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 233505 0.66 0.980662
Target:  5'- cCCGagccUGUGCCuuCugCUCcuGAGGACCc -3'
miRNA:   3'- -GGC----ACACGGucGugGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 207254 0.66 0.982642
Target:  5'- uCCGUGccGUuaCGGCACUCCGAGAcu-CCg -3'
miRNA:   3'- -GGCACa-CG--GUCGUGGGGUUCUucuGG- -5'
13995 5' -54.9 NC_003521.1 + 149430 0.66 0.978518
Target:  5'- -aGUGcUGUCuGCugCUCAAGucGGCCu -3'
miRNA:   3'- ggCAC-ACGGuCGugGGGUUCuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.