miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 194317 1.13 0.003609
Target:  5'- cCCGUGUGCCAGCACCCCAAGAAGACCc -3'
miRNA:   3'- -GGCACACGGUCGUGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152267 0.8 0.365387
Target:  5'- gCGg--GCCAGCuggugcccuGCCCCGAGGAGGCCg -3'
miRNA:   3'- gGCacaCGGUCG---------UGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152094 0.77 0.503685
Target:  5'- aCGUGcGCCGGCuCUgCGAGGAGACCc -3'
miRNA:   3'- gGCACaCGGUCGuGGgGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 115647 0.77 0.513113
Target:  5'- cUCGUgcGUGUCGGCGCCCCAguggcgggugaAGAAGGCg -3'
miRNA:   3'- -GGCA--CACGGUCGUGGGGU-----------UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 205585 0.76 0.561231
Target:  5'- aCCuUGUGCCGucucGCGCCCCGAGGAcgcucgauccGACCc -3'
miRNA:   3'- -GGcACACGGU----CGUGGGGUUCUU----------CUGG- -5'
13995 5' -54.9 NC_003521.1 + 77726 0.76 0.580841
Target:  5'- gUCGUGgcGCUGGCGCCCgAGGAcGGGCCg -3'
miRNA:   3'- -GGCACa-CGGUCGUGGGgUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 53578 0.76 0.5907
Target:  5'- aUCGUGUcGCCGGCACCCaugcuGguGGCCg -3'
miRNA:   3'- -GGCACA-CGGUCGUGGGguu--CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130178 0.75 0.620424
Target:  5'- gCCGUgaccGUGCCGGCGCCCggCGAGAu-GCCg -3'
miRNA:   3'- -GGCA----CACGGUCGUGGG--GUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 105051 0.75 0.640293
Target:  5'- cCCGUGcGCgAGCAgCCCCAGGGGcGAUCc -3'
miRNA:   3'- -GGCACaCGgUCGU-GGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 85486 0.75 0.660138
Target:  5'- gCCG-GUGCCcGCGCCCCcgccGGGACCc -3'
miRNA:   3'- -GGCaCACGGuCGUGGGGuuc-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 102705 0.74 0.709238
Target:  5'- gCG-GUGCCAGguCUCgGAGAAGACg -3'
miRNA:   3'- gGCaCACGGUCguGGGgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 184365 0.73 0.718906
Target:  5'- gCCGUG-GCgCGGCGCCUCucGGAccuGGGCCa -3'
miRNA:   3'- -GGCACaCG-GUCGUGGGGu-UCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 77624 0.73 0.718907
Target:  5'- cCCGUGa--CGGCGCCggCCGAGAGGAUCg -3'
miRNA:   3'- -GGCACacgGUCGUGG--GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 208414 0.73 0.725633
Target:  5'- gCCGUGcGCCAcgggcugcugugucGCACgCCCGAGGAccuGGCCa -3'
miRNA:   3'- -GGCACaCGGU--------------CGUG-GGGUUCUU---CUGG- -5'
13995 5' -54.9 NC_003521.1 + 164833 0.73 0.728504
Target:  5'- aCGUGcUGaCGGCGCCCgGcGAGGGCCg -3'
miRNA:   3'- gGCAC-ACgGUCGUGGGgUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 3400 0.73 0.766028
Target:  5'- cCCGac-GCCGGCAUCCgGGGAugGGGCCa -3'
miRNA:   3'- -GGCacaCGGUCGUGGGgUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111279 0.73 0.766028
Target:  5'- cCCGccGUGCCAGCGCCgCCGcgauGGAGaACUg -3'
miRNA:   3'- -GGCa-CACGGUCGUGG-GGUu---CUUC-UGG- -5'
13995 5' -54.9 NC_003521.1 + 94190 0.72 0.775149
Target:  5'- gUCGUG-GCCGGgGCCCUu-GAAGACg -3'
miRNA:   3'- -GGCACaCGGUCgUGGGGuuCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 63680 0.72 0.77515
Target:  5'- uUCGUGUGUCuGCGgCCCuccgacuucAAGAAGAUCa -3'
miRNA:   3'- -GGCACACGGuCGUgGGG---------UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 17358 0.72 0.78415
Target:  5'- gCCGUGacGCCGGCGCggcggcccagaCUCGAGAgGGACCg -3'
miRNA:   3'- -GGCACa-CGGUCGUG-----------GGGUUCU-UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.