miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 172003 0.72 0.801758
Target:  5'- aCCGacUGUGCCAGgGCCCgCAAGucuauccGGACg -3'
miRNA:   3'- -GGC--ACACGGUCgUGGG-GUUCu------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 169520 0.72 0.810348
Target:  5'- gCCGccccagGUGCUGGUGCCCCAGG--GGCCc -3'
miRNA:   3'- -GGCa-----CACGGUCGUGGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 205744 0.72 0.810348
Target:  5'- uCCGgcaUGUCgAGCGCCCgGAgGAAGACCu -3'
miRNA:   3'- -GGCac-ACGG-UCGUGGGgUU-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 215445 0.72 0.810349
Target:  5'- gCCGcggGUGCUGGCGCCaggCCGAGGGaGCCa -3'
miRNA:   3'- -GGCa--CACGGUCGUGG---GGUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 151572 0.71 0.816272
Target:  5'- cUCGUGUcaccgcGUCAGCACgCCCGauggggaaaucuugGGAGGGCCc -3'
miRNA:   3'- -GGCACA------CGGUCGUG-GGGU--------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 141802 0.71 0.818787
Target:  5'- cCCGga-GCCGGCGCCaucgucuaCAAGAcGACCg -3'
miRNA:   3'- -GGCacaCGGUCGUGGg-------GUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 112486 0.71 0.818787
Target:  5'- cCCGUGgGCCuGUACCUgcccGAGGACCg -3'
miRNA:   3'- -GGCACaCGGuCGUGGGguu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 203168 0.71 0.818787
Target:  5'- cCCGUcGUGCCGGCagaaugccACCaCCAGauguucaccgccGGAGGCCa -3'
miRNA:   3'- -GGCA-CACGGUCG--------UGG-GGUU------------CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 87458 0.71 0.827066
Target:  5'- aCGggcUGUGCCGGCACC---AGAAGAUCu -3'
miRNA:   3'- gGC---ACACGGUCGUGGgguUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 138235 0.71 0.827066
Target:  5'- aCGUG-GCCAGCgccaGCCCCGAGAcgcAGuuCu -3'
miRNA:   3'- gGCACaCGGUCG----UGGGGUUCU---UCugG- -5'
13995 5' -54.9 NC_003521.1 + 194080 0.71 0.835177
Target:  5'- ---aGUuCCAGCACCCCGAGAGucCCu -3'
miRNA:   3'- ggcaCAcGGUCGUGGGGUUCUUcuGG- -5'
13995 5' -54.9 NC_003521.1 + 14967 0.71 0.835177
Target:  5'- aCCGcaccUGUGCCcGCACCaCCAcGAgcgcgccguGGACCa -3'
miRNA:   3'- -GGC----ACACGGuCGUGG-GGUuCU---------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 192913 0.71 0.848564
Target:  5'- gCCGUGUGgaguuucugcguucCCAgagccGCGCCCUggGAcacuGGGCCa -3'
miRNA:   3'- -GGCACAC--------------GGU-----CGUGGGGuuCU----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 129068 0.71 0.850872
Target:  5'- aCCGUGUGCaUGGC-CUCCAcguuGAGGAUCu -3'
miRNA:   3'- -GGCACACG-GUCGuGGGGUu---CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 88210 0.71 0.858441
Target:  5'- gCCGccugGUGaccaaCCAGgGCgCCGAGGAGGCCa -3'
miRNA:   3'- -GGCa---CAC-----GGUCgUGgGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 134611 0.7 0.865819
Target:  5'- aUGUGcGCCGcGCACUCgGAGAuGGCCa -3'
miRNA:   3'- gGCACaCGGU-CGUGGGgUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 238487 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 148198 0.7 0.865819
Target:  5'- uCCGUGUcaugacGUCAGCGaUCCGGcGAGGACCg -3'
miRNA:   3'- -GGCACA------CGGUCGUgGGGUU-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 38259 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 193151 0.7 0.872289
Target:  5'- gCCGUGUcgucggcGCaCAGCAUCUCAGGA--GCCg -3'
miRNA:   3'- -GGCACA-------CG-GUCGUGGGGUUCUucUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.