Results 21 - 40 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 149430 | 0.66 | 0.978518 |
Target: 5'- -aGUGcUGUCuGCugCUCAAGucGGCCu -3' miRNA: 3'- ggCAC-ACGGuCGugGGGUUCuuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 100856 | 0.66 | 0.978518 |
Target: 5'- -gGUGUuCCacgAGCGCCUCAAGAGcGCCc -3' miRNA: 3'- ggCACAcGG---UCGUGGGGUUCUUcUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 121068 | 0.66 | 0.978518 |
Target: 5'- -gGUGUGCUGGUACUCCAGcuu-GCCg -3' miRNA: 3'- ggCACACGGUCGUGGGGUUcuucUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 31770 | 0.66 | 0.978518 |
Target: 5'- aUCGggGUcgcGCCAGuCGCCgCAcucgcAGAAGGCCg -3' miRNA: 3'- -GGCa-CA---CGGUC-GUGGgGU-----UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 23002 | 0.66 | 0.978518 |
Target: 5'- aCG-GUGauagCGGCA-UCCGAGGAGGCCa -3' miRNA: 3'- gGCaCACg---GUCGUgGGGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 222169 | 0.66 | 0.978518 |
Target: 5'- cCCGUG-GCCAGCagguccgugcgGCCCCAc----GCCa -3' miRNA: 3'- -GGCACaCGGUCG-----------UGGGGUucuucUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 111759 | 0.66 | 0.977842 |
Target: 5'- aCGUGgagGCCAugcacaggugcugcGCGCgCUCAAGAAcacGGCCg -3' miRNA: 3'- gGCACa--CGGU--------------CGUG-GGGUUCUU---CUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 4225 | 0.66 | 0.976204 |
Target: 5'- -----aGCCGGC-CCCgGgaGGAGGACCg -3' miRNA: 3'- ggcacaCGGUCGuGGGgU--UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 90020 | 0.66 | 0.976204 |
Target: 5'- uUCG-GU-CCAGCGCCCCcuGgcGGCUc -3' miRNA: 3'- -GGCaCAcGGUCGUGGGGuuCuuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 169776 | 0.66 | 0.976204 |
Target: 5'- -gGUGUGCaCGGUACgCCA--GAGGCUg -3' miRNA: 3'- ggCACACG-GUCGUGgGGUucUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 101226 | 0.66 | 0.975962 |
Target: 5'- aCCGUguuccugGUGCCgcGGCGCCaCGGcAAGACCu -3' miRNA: 3'- -GGCA-------CACGG--UCGUGGgGUUcUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 62858 | 0.66 | 0.975962 |
Target: 5'- -gGUGUGCCccgccucAGCAUCCCucccGGuaccGACCg -3' miRNA: 3'- ggCACACGG-------UCGUGGGGu---UCuu--CUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 64747 | 0.66 | 0.975475 |
Target: 5'- gCCGUGgccaagacgccgGCCGGCGCggcaccgggcgauCCCAAGcgccugcAGACCc -3' miRNA: 3'- -GGCACa-----------CGGUCGUG-------------GGGUUCu------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 219272 | 0.66 | 0.973711 |
Target: 5'- cCCGcagGgGCUGGCACaugagcgggCCCAuGAAGGCCa -3' miRNA: 3'- -GGCa--CaCGGUCGUG---------GGGUuCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 200992 | 0.66 | 0.973711 |
Target: 5'- gCCGgagGCCaagcaGGCGCCaUCGgcGGAGGACCg -3' miRNA: 3'- -GGCacaCGG-----UCGUGG-GGU--UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 212482 | 0.66 | 0.973711 |
Target: 5'- cCCGUG-GCCcacacGCACauggCCGAcGAGACCa -3' miRNA: 3'- -GGCACaCGGu----CGUGg---GGUUcUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 113057 | 0.66 | 0.973711 |
Target: 5'- gCCGUGcuCCAGCACCuuCCGGGcuacGAGGCg -3' miRNA: 3'- -GGCACacGGUCGUGG--GGUUC----UUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 184411 | 0.66 | 0.973711 |
Target: 5'- aCCGcgaGUaCCGGCGCUgCGAGGAGuCCu -3' miRNA: 3'- -GGCa--CAcGGUCGUGGgGUUCUUCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 215991 | 0.66 | 0.973711 |
Target: 5'- -gGUGcgGCCAGCGCCaCGcaGAGACUg -3' miRNA: 3'- ggCACa-CGGUCGUGGgGUucUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 765 | 0.66 | 0.973711 |
Target: 5'- gCCGgagGCCaagcaGGCGCCaUCGgcGGAGGACCg -3' miRNA: 3'- -GGCacaCGG-----UCGUGG-GGU--UCUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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